Functional clusters
Information
- Type InterPro
- Description GLABROUS1 enhancer-binding protein family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-5 | 5 | CH_aar_365 | 4 | 59 | 0.000336571 |
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_182 | 4 | 4 | 0.0000000176647 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 5 | CH_arhy_622 | 3 | 7 | 0.00000094095 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_264 | 5 | 46 | 0.000000672709 |
| Brassica carinata | ChrC02 | 5 | CH_bca_196 | 5 | 6 | 0.0000000000179114 |
| Brassica carinata | ChrB06 | 5 | CH_bca_371 | 4 | 4 | 0.00000000620901 |
| Brassica napus | A04 | 5 | CH_bna_1163 | 3 | 6 | 0.000190245 |
| Brassica napus | C04 | 5 | CH_bna_951 | 3 | 4 | 0.0000380741 |
| Brassica rapa | A01 | 5 | CH_bra_126 | 4 | 5 | 0.0000000177382 |
| Capsicum annuum | PGAv.1.6.scaffold337 | 5 | CH_can_114 | 6 | 10 | 0.00000000000014541 |
| Capsicum annuum | PGAv.1.6.scaffold162 | 5 | CH_can_197 | 5 | 12 | 0.00000000120515 |
| Carpinus fangiana | Cfa08 | 5 | CH_cfa_50 | 7 | 14 | 8.74196e-17 |
| Carya illinoinensis | Chr08 | 5 | CH_cil_862 | 2 | 2 | 0.000929742 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 5 | CH_cqu_928 | 2 | 2 | 0.000473821 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_378 | 3 | 3 | 0.0000142018 |
| Capsella rubella | scaffold_3 | 5 | CH_cru_485 | 4 | 25 | 0.000129739 |
| Daucus carota | DCARv2_Chr4 | 5 | CH_dca_561 | 4 | 53 | 0.000224956 |
| Eutrema salsugineum | scaffold_14 | 5 | CH_esa_160 | 6 | 56 | 0.000000049612 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_830 | 2 | 2 | 0.000883652 |
| Marchantia polymorpha | scaffold_78 | 5 | CH_mpo_215 | 2 | 2 | 0.000662654 |
| Medicago truncatula | chr1 | 5 | CH_mtr_518 | 3 | 3 | 0.0000000506436 |
| Olea europaea | scaffold180 | 5 | CH_oeu_234 | 4 | 37 | 0.00000629657 |
| Oryza sativa ssp. japonica | chr09 | 5 | CH_osa_276 | 4 | 11 | 0.00000019871 |
| Punica granatum | NC_045127.1 | 5 | CH_pgr_400 | 3 | 9 | 0.0000595201 |
| Papaver somniferum | NC_039360.1 | 5 | CH_pso_776 | 3 | 6 | 0.0000202425 |
| Phaseolus vulgaris | Chr07 | 5 | CH_pvu_676 | 2 | 2 | 0.000734727 |
| Quercus lobata | 8 | 5 | CH_qlo_786 | 4 | 8 | 0.0000000883294 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_1322 | 2 | 2 | 0.000398653 |
| Rhododendron simsii | chr11 | 5 | CH_rsi_623 | 3 | 6 | 0.0000357007 |
| Striga asiatica | scaffold52 | 5 | CH_sas_4 | 9 | 64 | 0.000000000000031146 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1370 | 4 | 33 | 0.00000296838 |
| Solanum lycopersicum | SL4.0ch07 | 5 | CH_sly_242 | 5 | 19 | 0.00000000882646 |
| Solanum lycopersicum | SL4.0ch07 | 5 | CH_sly_444 | 3 | 3 | 0.00000421679 |
| Schrenkiella parvula | ch7-2 | 5 | CH_spa_86 | 6 | 38 | 0.0000000137701 |
| Solanum pennellii | Spenn-ch07 | 5 | CH_spe_301 | 4 | 10 | 0.000000169375 |
| Solanum pennellii | Spenn-ch07 | 5 | CH_spe_387 | 3 | 3 | 0.0000024216 |
| Solanum tuberosum | ST4.03ch07 | 5 | CH_stu_315 | 4 | 5 | 0.0000000354117 |
| Solanum tuberosum | ST4.03ch07 | 5 | CH_stu_34 | 11 | 28 | 1.35535e-24 |
| Tarenaya hassleriana | NW_010961290.1 | 5 | CH_tha_173 | 3 | 7 | 0.0000214989 |
| Zea mays | 6 | 5 | CH_zma_191 | 4 | 7 | 0.000000245988 |
| Aethionema arabicum | LG-5 | 6 | CH_aar_365 | 4 | 59 | 0.000336571 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_182 | 4 | 4 | 0.0000000176647 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 6 | CH_arhy_622 | 3 | 7 | 0.00000094095 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_264 | 5 | 46 | 0.000000672709 |
| Brassica carinata | ChrC02 | 6 | CH_bca_196 | 5 | 6 | 0.0000000000179114 |
| Brassica carinata | ChrB06 | 6 | CH_bca_371 | 4 | 4 | 0.00000000620901 |
| Brassica napus | A04 | 6 | CH_bna_1163 | 3 | 6 | 0.000190245 |
| Brassica napus | C04 | 6 | CH_bna_951 | 3 | 4 | 0.0000380741 |
| Brassica rapa | A01 | 6 | CH_bra_126 | 4 | 5 | 0.0000000177382 |
| Capsicum annuum | PGAv.1.6.scaffold337 | 6 | CH_can_114 | 6 | 10 | 0.00000000000014541 |
| Capsicum annuum | PGAv.1.6.scaffold162 | 6 | CH_can_197 | 5 | 12 | 0.00000000120515 |
| Carpinus fangiana | Cfa08 | 6 | CH_cfa_50 | 7 | 14 | 8.74196e-17 |
| Carya illinoinensis | Chr08 | 6 | CH_cil_862 | 2 | 2 | 0.000929742 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 6 | CH_cqu_928 | 2 | 2 | 0.000473821 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_378 | 3 | 3 | 0.0000142018 |
| Capsella rubella | scaffold_3 | 6 | CH_cru_485 | 4 | 25 | 0.000129739 |
| Daucus carota | DCARv2_Chr4 | 6 | CH_dca_561 | 4 | 53 | 0.000224956 |
| Eutrema salsugineum | scaffold_14 | 6 | CH_esa_160 | 6 | 56 | 0.000000049612 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_830 | 2 | 2 | 0.000883652 |
| Marchantia polymorpha | scaffold_78 | 6 | CH_mpo_215 | 2 | 2 | 0.000662654 |
| Medicago truncatula | chr1 | 6 | CH_mtr_518 | 3 | 3 | 0.0000000506436 |
| Olea europaea | scaffold180 | 6 | CH_oeu_234 | 4 | 37 | 0.00000629657 |
| Oryza sativa ssp. japonica | chr09 | 6 | CH_osa_276 | 4 | 11 | 0.00000019871 |
| Punica granatum | NC_045127.1 | 6 | CH_pgr_400 | 3 | 9 | 0.0000595201 |
| Papaver somniferum | NC_039360.1 | 6 | CH_pso_776 | 3 | 6 | 0.0000202425 |
| Phaseolus vulgaris | Chr07 | 6 | CH_pvu_676 | 2 | 2 | 0.000734727 |
| Quercus lobata | 8 | 6 | CH_qlo_786 | 4 | 8 | 0.0000000883294 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_1322 | 2 | 2 | 0.000398653 |
| Rhododendron simsii | chr11 | 6 | CH_rsi_623 | 3 | 6 | 0.0000357007 |
| Striga asiatica | scaffold52 | 6 | CH_sas_4 | 9 | 64 | 0.000000000000031146 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1370 | 4 | 33 | 0.00000296838 |
| Solanum lycopersicum | SL4.0ch07 | 6 | CH_sly_242 | 5 | 19 | 0.00000000882646 |
| Solanum lycopersicum | SL4.0ch07 | 6 | CH_sly_444 | 3 | 3 | 0.00000421679 |
| Schrenkiella parvula | ch7-2 | 6 | CH_spa_86 | 6 | 38 | 0.0000000137701 |
| Solanum pennellii | Spenn-ch07 | 6 | CH_spe_301 | 4 | 10 | 0.000000169375 |
| Solanum pennellii | Spenn-ch07 | 6 | CH_spe_387 | 3 | 3 | 0.0000024216 |
| Solanum tuberosum | ST4.03ch07 | 6 | CH_stu_315 | 4 | 5 | 0.0000000354117 |
| Solanum tuberosum | ST4.03ch07 | 6 | CH_stu_34 | 11 | 28 | 1.35535e-24 |
| Tarenaya hassleriana | NW_010961290.1 | 6 | CH_tha_173 | 3 | 7 | 0.0000214989 |
| Zea mays | 6 | 6 | CH_zma_191 | 4 | 7 | 0.000000245988 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |