Functional clusters

Information

  • Type InterPro
  • Description Uncharacterised protein family, basic secretory protein

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 5 CH_acertr_183 4 5 0.00000000525951
Acer truncatum chr5 5 CH_acertr_25 9 41 6.03363e-19
Arabidopsis lyrata scaffold_3 5 CH_aly_527 2 2 0.000198013
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 5 CH_amhyb_461 2 2 0.000841751
Arabidopsis thaliana Chr2 5 CH_ath_332 3 25 0.0000113206
Brassica carinata ChrC06 5 CH_bca_1790 2 2 0.000448905
Brassica napus C07 5 CH_bna_428 3 4 0.0000000723504
Brassica oleracea C7 5 CH_bol_727 2 2 0.000326861
Beta vulgaris Chr9_EL10_PGA_scaffold8 5 CH_bvu_348 2 2 0.0000827917
Camellia sinensis var. sinensis Chr13 5 CH_camsi_665 4 24 0.00000151637
Camellia sinensis var. sinensis Chr3 5 CH_camsi_74 7 14 1.98885e-18
Cannabis sativa NC_044370.1 5 CH_cansat_192 4 39 0.0000000697898
Capsicum annuum PGAv.1.6.scaffold606 5 CH_can_276 3 3 0.0000000409487
Cicer arietinum L. Ca_LG4_v3 5 CH_car_59 3 3 0.0000000363466
Corylus avellana 9 5 CH_cav_211 3 3 0.0000000352706
Citrus clementina scaffold_8 5 CH_ccl_170 4 5 0.0000000000414017
Carpinus fangiana Cfa02 5 CH_cfa_59 5 5 0.00000000000000148078
Cardamine hirsuta Chr3 5 CH_chi_310 3 6 0.000000573232
Carya illinoinensis Chr05 5 CH_cil_87 5 5 1.1072e-16
Citrullus lanatus CG_Chr02 5 CH_cla_91 3 3 0.0000000472204
Corchorus olitorius AWUE01021135.1 5 CH_col_218 2 2 0.000876296
Chenopodium quinoa C_Quinoa_Scaffold_1257 5 CH_cqu_157 4 4 0.000000000040213
Chenopodium quinoa C_Quinoa_Scaffold_4383 5 CH_cqu_362 3 3 0.000000282885
Capsella rubella scaffold_3 5 CH_cru_533 2 2 0.000219346
Cucumis sativus L. chr7 5 CH_csa_164 3 3 0.0000000418111
Daucus carota DCARv2_Chr6 5 CH_dca_245 3 3 0.000000512531
Daucus carota DCARv2_Chr3 5 CH_dca_246 3 3 0.000000512531
Davidia involucrata GWHABJS00000005 5 CH_din_654 2 2 0.000300075
Davidia involucrata GWHABJS00000002 5 CH_din_655 2 2 0.000300075
Erigeron canadensis Conyza_canadensis_scaffold:5 5 CH_eca_219 4 16 0.0000000172514
Eucalyptus grandis Chr07 5 CH_egr_135 8 10 4.2922e-22
Eucalyptus grandis Chr07 5 CH_egr_881 3 3 0.00000287747
Erythranthe guttata scaffold_14 5 CH_egut_293 3 3 0.000000159065
Eutrema salsugineum scaffold_11 5 CH_esa_272 3 14 0.0000126558
Fragaria vesca Fvb2 5 CH_fve_151 4 6 0.0000000000459987
Gossypium hirsutum D13 5 CH_ghi_503 3 4 0.000000239547
Glycine max Gm20 5 CH_gma_339 3 3 0.000000121016
Gossypium raimondii Chr13 5 CH_gra_261 3 4 0.000000172439
Helianthus annuus HanXRQChr17 5 CH_han_175 5 5 0.000000000000888646
Helianthus annuus HanXRQChr03 5 CH_han_179 6 14 0.00000000000102855
Helianthus annuus HanXRQChr03 5 CH_han_951 3 7 0.000180072
Hydrangea macrophylla Hma1.2p1_0796F.1 5 CH_hma_558 2 2 0.000333259
Lotus japonicus chr5 5 CH_lja_525 2 2 0.000429046
Lonicera japonica GWHAAZE00000009 5 CH_lonja_101 6 6 1.21364e-19
Lactuca sativa Lsat_1_v8_lg_6 5 CH_lsa_187 4 4 0.0000000000855619
Lactuca sativa Lsat_1_v8_lg_9 5 CH_lsa_210 4 5 0.000000000427746
Manihot esculenta Chromosome07 5 CH_mes_135 5 12 0.000000000000495408
Medicago truncatula chr1 5 CH_mtr_1070 2 2 0.000123259
Nelumbo nucifera chr3 5 CH_nnu_598 2 2 0.000722526
Oryza sativa ssp. japonica chr10 5 CH_osa_217 3 3 0.0000000167352
Punica granatum NC_045130.1 5 CH_pgr_147 4 4 0.000000000906315
Punica granatum NC_045130.1 5 CH_pgr_300 3 3 0.00000241551
Punica granatum NC_045128.1 5 CH_pgr_79 5 5 0.000000000000306061
Prunus persica Pp08 5 CH_ppe_131 5 5 0.0000000000000292683
Papaver somniferum NC_039358.1 5 CH_pso_236 4 5 0.0000000000216122
Papaver somniferum NC_039363.1 5 CH_pso_453 3 3 0.0000000639549
Populus trichocarpa Chr01 5 CH_ptr_316 3 3 0.000000100229
Populus trichocarpa Chr09 5 CH_ptr_794 2 2 0.000867002
Phaseolus vulgaris Chr07 5 CH_pvu_537 2 2 0.000220418
Quercus lobata 11 5 CH_qlo_206 6 9 4.85371e-18
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_132 6 9 1.59848e-17
Rhododendron simsii chr11 5 CH_rsi_38 10 22 9.78663e-28
Salvia bowleyana GWHASIU00000002 5 CH_sbo_180 4 4 0.0000000000356039
Salvia bowleyana GWHASIU00000006 5 CH_sbo_351 3 4 0.00000104321
Sequoiadendron giganteum HRSCAF_1 5 CH_sgi_115 8 9 1.66205e-26
Solanum lycopersicum SL4.0ch03 5 CH_sly_133 5 8 0.00000000000125576
Selaginella moellendorffii scaffold_23 5 CH_smo_14 7 13 5.75321e-16
Schrenkiella parvula ch3-5 5 CH_spa_287 2 2 0.000236202
Solanum pennellii Spenn-ch01 5 CH_spe_719 2 2 0.000266874
Trochodendron aralioides group6 5 CH_tar_878 2 2 0.000600366
Trochodendron aralioides group5 5 CH_tar_879 2 2 0.000600366
Theobroma cacao Chromosome_2 5 CH_tca_60 6 7 9.29512e-18
Trifolium pratense Tp57577_TGAC_v2_scaf_82 5 CH_tpr_155 3 3 0.00000000859546
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_445 2 2 0.0000929238
Vigna mungo CM024071.1 5 CH_vmu_442 2 2 0.000193842
Vitis vinifera chr3 5 CH_vvi_607 2 2 0.000228189
Acer truncatum chr3 6 CH_acertr_183 4 5 0.00000000525951
Acer truncatum chr5 6 CH_acertr_25 9 41 6.03363e-19
Arabidopsis lyrata scaffold_3 6 CH_aly_527 2 2 0.000198013
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 6 CH_amhyb_461 2 2 0.000841751
Arabidopsis thaliana Chr2 6 CH_ath_332 3 25 0.0000113206
Brassica carinata ChrC06 6 CH_bca_1790 2 2 0.000448905
Brassica napus C07 6 CH_bna_428 3 4 0.0000000723504
Brassica oleracea C7 6 CH_bol_727 2 2 0.000326861
Beta vulgaris Chr9_EL10_PGA_scaffold8 6 CH_bvu_348 2 2 0.0000827917
Camellia sinensis var. sinensis Chr13 6 CH_camsi_665 4 24 0.00000151637
Camellia sinensis var. sinensis Chr3 6 CH_camsi_74 7 14 1.98885e-18
Cannabis sativa NC_044370.1 6 CH_cansat_192 4 39 0.0000000697898
Capsicum annuum PGAv.1.6.scaffold606 6 CH_can_276 3 3 0.0000000409487
Cicer arietinum L. Ca_LG4_v3 6 CH_car_59 3 3 0.0000000363466
Corylus avellana 9 6 CH_cav_211 3 3 0.0000000352706
Citrus clementina scaffold_8 6 CH_ccl_170 4 5 0.0000000000414017
Carpinus fangiana Cfa02 6 CH_cfa_59 5 5 0.00000000000000148078
Cardamine hirsuta Chr3 6 CH_chi_310 3 6 0.000000573232
Carya illinoinensis Chr05 6 CH_cil_87 5 5 1.1072e-16
Citrullus lanatus CG_Chr02 6 CH_cla_91 3 3 0.0000000472204
Cucumis melo chr01 6 CH_cme_365 2 2 0.000200133
Corchorus olitorius AWUE01021135.1 6 CH_col_218 2 2 0.000876296
Chenopodium quinoa C_Quinoa_Scaffold_1257 6 CH_cqu_157 4 4 0.000000000040213
Chenopodium quinoa C_Quinoa_Scaffold_4383 6 CH_cqu_362 3 3 0.000000282885
Capsella rubella scaffold_3 6 CH_cru_533 2 2 0.000219346
Cucumis sativus L. chr7 6 CH_csa_164 3 3 0.0000000418111
Daucus carota DCARv2_Chr6 6 CH_dca_245 3 3 0.000000512531
Daucus carota DCARv2_Chr3 6 CH_dca_246 3 3 0.000000512531
Davidia involucrata GWHABJS00000005 6 CH_din_654 2 2 0.000300075
Davidia involucrata GWHABJS00000002 6 CH_din_655 2 2 0.000300075
Erigeron canadensis Conyza_canadensis_scaffold:5 6 CH_eca_219 4 16 0.0000000172514
Eucalyptus grandis Chr07 6 CH_egr_135 8 10 4.2922e-22
Eucalyptus grandis Chr07 6 CH_egr_881 3 3 0.00000287747
Erythranthe guttata scaffold_14 6 CH_egut_293 3 3 0.000000159065
Eutrema salsugineum scaffold_11 6 CH_esa_272 3 14 0.0000126558
Fragaria x ananassa Fvb2-4 6 CH_fan_520 3 7 0.00000296516
Fragaria x ananassa Fvb2-3 6 CH_fan_600 3 9 0.00000711546
Fragaria vesca Fvb2 6 CH_fve_151 4 6 0.0000000000459987
Gossypium hirsutum D13 6 CH_ghi_503 3 4 0.000000239547
Glycine max Gm20 6 CH_gma_339 3 3 0.000000121016
Gossypium raimondii Chr13 6 CH_gra_261 3 4 0.000000172439
Helianthus annuus HanXRQChr17 6 CH_han_175 5 5 0.000000000000888646
Helianthus annuus HanXRQChr03 6 CH_han_179 6 14 0.00000000000102855
Helianthus annuus HanXRQChr03 6 CH_han_951 3 7 0.000180072
Hydrangea macrophylla Hma1.2p1_0796F.1 6 CH_hma_558 2 2 0.000333259
Lotus japonicus chr5 6 CH_lja_525 2 2 0.000429046
Lonicera japonica GWHAAZE00000009 6 CH_lonja_101 6 6 1.21364e-19
Lactuca sativa Lsat_1_v8_lg_6 6 CH_lsa_187 4 4 0.0000000000855619
Lactuca sativa Lsat_1_v8_lg_9 6 CH_lsa_210 4 5 0.000000000427746
Manihot esculenta Chromosome07 6 CH_mes_135 5 12 0.000000000000495408
Medicago truncatula chr1 6 CH_mtr_1070 2 2 0.000123259
Nelumbo nucifera chr3 6 CH_nnu_598 2 2 0.000722526
Oryza sativa ssp. japonica chr10 6 CH_osa_217 3 3 0.0000000167352
Punica granatum NC_045130.1 6 CH_pgr_147 4 4 0.000000000906315
Punica granatum NC_045130.1 6 CH_pgr_300 3 3 0.00000241551
Punica granatum NC_045128.1 6 CH_pgr_79 5 5 0.000000000000306061
Prunus persica Pp08 6 CH_ppe_131 5 5 0.0000000000000292683
Papaver somniferum NC_039358.1 6 CH_pso_236 4 5 0.0000000000216122
Papaver somniferum NC_039363.1 6 CH_pso_453 3 3 0.0000000639549
Populus trichocarpa Chr01 6 CH_ptr_316 3 3 0.000000100229
Populus trichocarpa Chr09 6 CH_ptr_794 2 2 0.000867002
Phaseolus vulgaris Chr07 6 CH_pvu_537 2 2 0.000220418
Quercus lobata 11 6 CH_qlo_206 6 9 4.85371e-18
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_132 6 9 1.59848e-17
Rhododendron simsii chr11 6 CH_rsi_38 10 22 9.78663e-28
Salvia bowleyana GWHASIU00000002 6 CH_sbo_180 4 4 0.0000000000356039
Salvia bowleyana GWHASIU00000006 6 CH_sbo_351 3 4 0.00000104321
Sequoiadendron giganteum HRSCAF_1 6 CH_sgi_115 8 9 1.66205e-26
Solanum lycopersicum SL4.0ch03 6 CH_sly_133 5 8 0.00000000000125576
Selaginella moellendorffii scaffold_23 6 CH_smo_14 7 13 5.75321e-16
Schrenkiella parvula ch3-5 6 CH_spa_287 2 2 0.000236202
Solanum pennellii Spenn-ch01 6 CH_spe_719 2 2 0.000266874
Trochodendron aralioides group6 6 CH_tar_878 2 2 0.000600366
Trochodendron aralioides group5 6 CH_tar_879 2 2 0.000600366
Theobroma cacao Chromosome_2 6 CH_tca_60 6 7 9.29512e-18
Trifolium pratense Tp57577_TGAC_v2_scaf_82 6 CH_tpr_155 3 3 0.00000000859546
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_445 2 2 0.0000929238
Vigna mungo CM024071.1 6 CH_vmu_442 2 2 0.000193842
Vitis vinifera chr3 6 CH_vvi_607 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001