Functional clusters
Information
- Type InterPro
- Description Ctr copper transporter
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-1 | 5 | CH_aar_387 | 2 | 2 | 0.000547395 |
| Acer truncatum | chr3 | 5 | CH_acertr_128 | 4 | 4 | 0.000000000132449 |
| Aquilegia oxysepala | CHR01 | 5 | CH_aox_140 | 3 | 3 | 0.0000000964818 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 5 | CH_arhy_487 | 3 | 4 | 0.000000107553 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 5 | CH_arhy_488 | 3 | 4 | 0.000000107553 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_556 | 2 | 2 | 0.000429738 |
| Amborella trichopoda | AmTr_v1.0_scaffold00165 | 5 | CH_atr_489 | 2 | 2 | 0.000238322 |
| Brassica carinata | ChrC03 | 5 | CH_bca_773 | 3 | 3 | 0.00000121391 |
| Brassica carinata | ChrB08 | 5 | CH_bca_774 | 3 | 3 | 0.00000121391 |
| Brassica napus | C02 | 5 | CH_bna_590 | 3 | 3 | 0.00000104602 |
| Brassica napus | C09 | 5 | CH_bna_949 | 3 | 7 | 0.0000365879 |
| Brassica oleracea | C2 | 5 | CH_bol_285 | 3 | 3 | 0.000000352573 |
| Camellia sinensis var. sinensis | Chr11 | 5 | CH_camsi_646 | 3 | 5 | 0.00000110372 |
| Corylus avellana | 6 | 5 | CH_cav_210 | 3 | 3 | 0.0000000352706 |
| Chara braunii | BFEA01000158 | 5 | CH_cbr_85 | 3 | 7 | 0.000000271579 |
| Coffea canephora | chr6 | 5 | CH_ccan_120 | 3 | 5 | 0.00000000544142 |
| Coffea canephora | chr1 | 5 | CH_ccan_680 | 2 | 5 | 0.000638821 |
| Citrus clementina | scaffold_8 | 5 | CH_ccl_102 | 6 | 9 | 0.00000000000000324259 |
| Cardamine hirsuta | NSCAFA.214I | 5 | CH_chi_780 | 2 | 2 | 0.000691204 |
| Carya illinoinensis | Chr09 | 5 | CH_cil_422 | 3 | 3 | 0.00000164821 |
| Corchorus olitorius | AWUE01016544.1 | 5 | CH_col_75 | 3 | 3 | 0.00000128001 |
| Carica papaya | supercontig_56 | 5 | CH_cpa_490 | 2 | 2 | 0.000285198 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2465 | 5 | CH_cqu_474 | 3 | 6 | 0.00000235671 |
| Capsella rubella | scaffold_8 | 5 | CH_cru_645 | 2 | 2 | 0.000731154 |
| Cucumis sativus L. | chr1 | 5 | CH_csa_325 | 3 | 14 | 0.0000759828 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_750 | 2 | 2 | 0.000956663 |
| Daucus carota | DCARv2_Chr2 | 5 | CH_dca_751 | 2 | 2 | 0.000956663 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 5 | CH_eca_820 | 2 | 2 | 0.000673083 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_269 | 6 | 8 | 0.00000000000000216495 |
| Eucalyptus grandis | Chr01 | 5 | CH_egr_993 | 3 | 5 | 0.0000233658 |
| Eutrema salsugineum | scaffold_2 | 5 | CH_esa_514 | 2 | 2 | 0.000761499 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_713 | 2 | 2 | 0.000353461 |
| Gossypium hirsutum | A03 | 5 | CH_ghi_1070 | 3 | 11 | 0.000271311 |
| Gossypium hirsutum | D03 | 5 | CH_ghi_1071 | 3 | 11 | 0.000271311 |
| Gossypium raimondii | Chr03 | 5 | CH_gra_475 | 3 | 12 | 0.000156235 |
| Lupinus albus | Lalb_Chr19 | 5 | CH_lal_690 | 2 | 2 | 0.000524824 |
| Lotus japonicus | chr1 | 5 | CH_lja_605 | 2 | 2 | 0.000715077 |
| Malus domestica | Chr12 | 5 | CH_mdo_538 | 3 | 3 | 0.000000474554 |
| Medicago truncatula | chr4 | 5 | CH_mtr_1302 | 3 | 32 | 0.00043854 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_238 | 3 | 3 | 0.000000295604 |
| Prunus persica | Pp06 | 5 | CH_ppe_237 | 4 | 6 | 0.000000000653687 |
| Phaseolus vulgaris | Chr11 | 5 | CH_pvu_675 | 2 | 2 | 0.000734727 |
| Quercus lobata | 1 | 5 | CH_qlo_458 | 4 | 4 | 0.0000000000144511 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_1397 | 2 | 2 | 0.000597979 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_595 | 3 | 4 | 0.0000001907 |
| Salvia bowleyana | GWHASIU00000007 | 5 | CH_sbo_319 | 3 | 4 | 0.000000248395 |
| Simmondsia chinensis | GWHAASQ00000012 | 5 | CH_sci_456 | 2 | 2 | 0.000510856 |
| Sechium edule | LG01 | 5 | CH_sed_179 | 3 | 3 | 0.000000267217 |
| Selaginella moellendorffii | scaffold_21 | 5 | CH_smo_134 | 3 | 4 | 0.00000292876 |
| Trochodendron aralioides | group7 | 5 | CH_tar_274 | 3 | 3 | 0.000000189236 |
| Theobroma cacao | Chromosome_9 | 5 | CH_tca_330 | 3 | 3 | 0.000000281615 |
| Tripterygium wilfordii | NC_052233.1 | 5 | CH_twi_57 | 5 | 7 | 0.0000000000019577 |
| Vitis vinifera | chr6 | 5 | CH_vvi_367 | 3 | 4 | 0.00000121483 |
| Aethionema arabicum | LG-1 | 6 | CH_aar_387 | 2 | 2 | 0.000547395 |
| Acer truncatum | chr3 | 6 | CH_acertr_128 | 4 | 4 | 0.000000000132449 |
| Aquilegia oxysepala | CHR01 | 6 | CH_aox_140 | 3 | 3 | 0.0000000964818 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 6 | CH_arhy_487 | 3 | 4 | 0.000000107553 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 6 | CH_arhy_488 | 3 | 4 | 0.000000107553 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_556 | 2 | 2 | 0.000429738 |
| Amborella trichopoda | AmTr_v1.0_scaffold00165 | 6 | CH_atr_489 | 2 | 2 | 0.000238322 |
| Brassica carinata | ChrC03 | 6 | CH_bca_773 | 3 | 3 | 0.00000121391 |
| Brassica carinata | ChrB08 | 6 | CH_bca_774 | 3 | 3 | 0.00000121391 |
| Brassica napus | C02 | 6 | CH_bna_590 | 3 | 3 | 0.00000104602 |
| Brassica napus | C09 | 6 | CH_bna_949 | 3 | 7 | 0.0000365879 |
| Brassica oleracea | C2 | 6 | CH_bol_285 | 3 | 3 | 0.000000352573 |
| Camellia sinensis var. sinensis | Chr11 | 6 | CH_camsi_646 | 3 | 5 | 0.00000110372 |
| Corylus avellana | 6 | 6 | CH_cav_210 | 3 | 3 | 0.0000000352706 |
| Chara braunii | BFEA01000158 | 6 | CH_cbr_85 | 3 | 7 | 0.000000271579 |
| Coffea canephora | chr6 | 6 | CH_ccan_120 | 3 | 5 | 0.00000000544142 |
| Coffea canephora | chr1 | 6 | CH_ccan_680 | 2 | 5 | 0.000638821 |
| Citrus clementina | scaffold_8 | 6 | CH_ccl_102 | 6 | 9 | 0.00000000000000324259 |
| Cardamine hirsuta | NSCAFA.214I | 6 | CH_chi_780 | 2 | 2 | 0.000691204 |
| Carya illinoinensis | Chr09 | 6 | CH_cil_422 | 3 | 3 | 0.00000164821 |
| Cucumis melo | chr12 | 6 | CH_cme_188 | 3 | 4 | 0.000000534005 |
| Corchorus olitorius | AWUE01016544.1 | 6 | CH_col_75 | 3 | 3 | 0.00000128001 |
| Carica papaya | supercontig_56 | 6 | CH_cpa_490 | 2 | 2 | 0.000285198 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2465 | 6 | CH_cqu_474 | 3 | 6 | 0.00000235671 |
| Capsella rubella | scaffold_8 | 6 | CH_cru_645 | 2 | 2 | 0.000731154 |
| Cucumis sativus L. | chr1 | 6 | CH_csa_325 | 3 | 14 | 0.0000759828 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_750 | 2 | 2 | 0.000956663 |
| Daucus carota | DCARv2_Chr2 | 6 | CH_dca_751 | 2 | 2 | 0.000956663 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 6 | CH_eca_820 | 2 | 2 | 0.000673083 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_269 | 6 | 8 | 0.00000000000000216495 |
| Eucalyptus grandis | Chr01 | 6 | CH_egr_993 | 3 | 5 | 0.0000233658 |
| Eutrema salsugineum | scaffold_2 | 6 | CH_esa_514 | 2 | 2 | 0.000761499 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_713 | 2 | 2 | 0.000353461 |
| Gossypium hirsutum | A03 | 6 | CH_ghi_1070 | 3 | 11 | 0.000271311 |
| Gossypium hirsutum | D03 | 6 | CH_ghi_1071 | 3 | 11 | 0.000271311 |
| Gossypium raimondii | Chr03 | 6 | CH_gra_475 | 3 | 12 | 0.000156235 |
| Lupinus albus | Lalb_Chr19 | 6 | CH_lal_690 | 2 | 2 | 0.000524824 |
| Lotus japonicus | chr1 | 6 | CH_lja_605 | 2 | 2 | 0.000715077 |
| Malus domestica | Chr12 | 6 | CH_mdo_538 | 3 | 3 | 0.000000474554 |
| Medicago truncatula | chr4 | 6 | CH_mtr_1302 | 3 | 32 | 0.00043854 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_238 | 3 | 3 | 0.000000295604 |
| Prunus persica | Pp06 | 6 | CH_ppe_237 | 4 | 6 | 0.000000000653687 |
| Phaseolus vulgaris | Chr11 | 6 | CH_pvu_675 | 2 | 2 | 0.000734727 |
| Quercus lobata | 1 | 6 | CH_qlo_458 | 4 | 4 | 0.0000000000144511 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_1397 | 2 | 2 | 0.000597979 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_595 | 3 | 4 | 0.0000001907 |
| Salvia bowleyana | GWHASIU00000007 | 6 | CH_sbo_319 | 3 | 4 | 0.000000248395 |
| Simmondsia chinensis | GWHAASQ00000012 | 6 | CH_sci_456 | 2 | 2 | 0.000510856 |
| Sechium edule | LG01 | 6 | CH_sed_179 | 3 | 3 | 0.000000267217 |
| Selaginella moellendorffii | scaffold_21 | 6 | CH_smo_134 | 3 | 4 | 0.00000292876 |
| Trochodendron aralioides | group7 | 6 | CH_tar_274 | 3 | 3 | 0.000000189236 |
| Theobroma cacao | Chromosome_9 | 6 | CH_tca_330 | 3 | 3 | 0.000000281615 |
| Tripterygium wilfordii | NC_052233.1 | 6 | CH_twi_57 | 5 | 7 | 0.0000000000019577 |
| Vitis vinifera | chr6 | 6 | CH_vvi_367 | 3 | 4 | 0.00000121483 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |