Functional clusters

Information

  • Type InterPro
  • Description SCAMP

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr10 5 CH_acertr_886 2 2 0.000422982
Amaranthus hybridus AmaHy_arrow1_Scaffold_7 5 CH_amhyb_380 2 2 0.000505051
Corylus avellana 4 5 CH_cav_825 2 2 0.000766695
Corchorus olitorius AWUE01020860.1 5 CH_col_148 2 2 0.000292099
Punica granatum NC_045130.1 5 CH_pgr_560 2 2 0.000450214
Quercus lobata 5 5 CH_qlo_1579 2 2 0.000309773
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_327 6 58 0.0000000000421423
Selenicereus undatus Scaffold_33678 5 CH_sun_385 2 2 0.000726639
Theobroma cacao Chromosome_6 5 CH_tca_293 3 3 0.0000000804614
Trifolium pratense Tp57577_TGAC_v2_LG4 5 CH_tpr_768 2 2 0.000756974
Acer truncatum chr10 6 CH_acertr_886 2 2 0.000422982
Amaranthus hybridus AmaHy_arrow1_Scaffold_7 6 CH_amhyb_380 2 2 0.000505051
Corylus avellana 4 6 CH_cav_825 2 2 0.000766695
Corchorus olitorius AWUE01020860.1 6 CH_col_148 2 2 0.000292099
Punica granatum NC_045130.1 6 CH_pgr_560 2 2 0.000450214
Quercus lobata 5 6 CH_qlo_1579 2 2 0.000309773
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_327 6 58 0.0000000000421423
Selenicereus undatus Scaffold_33678 6 CH_sun_385 2 2 0.000726639
Theobroma cacao Chromosome_6 6 CH_tca_293 3 3 0.0000000804614
Trifolium pratense Tp57577_TGAC_v2_LG4 6 CH_tpr_768 2 2 0.000756974

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001