Functional clusters
Information
- Type InterPro
- Description Expansin, cellulose-binding-like domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 5 | CH_arhy_1058 | 4 | 16 | 0.000253368 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 5 | CH_arhy_1285 | 4 | 21 | 0.000829246 |
| Camellia sinensis var. sinensis | Chr12 | 5 | CH_camsi_1450 | 4 | 27 | 0.000743035 |
| Cannabis sativa | NC_044374.1 | 5 | CH_cansat_127 | 5 | 7 | 0.000000000588868 |
| Coffea canephora | chr8 | 5 | CH_ccan_76 | 5 | 40 | 0.00000000010653 |
| Citrus clementina | scaffold_3 | 5 | CH_ccl_586 | 3 | 4 | 0.000147411 |
| Carpinus fangiana | Cfa05 | 5 | CH_cfa_368 | 3 | 3 | 0.0000251665 |
| Carya illinoinensis | Chr11 | 5 | CH_cil_276 | 5 | 10 | 0.0000000139432 |
| Citrullus lanatus | CG_Chr02 | 5 | CH_cla_188 | 3 | 3 | 0.0000479287 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_434 | 3 | 3 | 0.0000676491 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_1227 | 3 | 4 | 0.000235744 |
| Glycine max | Gm17 | 5 | CH_gma_246 | 5 | 7 | 0.00000000602596 |
| Helianthus annuus | HanXRQChr16 | 5 | CH_han_839 | 3 | 3 | 0.0000555597 |
| Lotus japonicus | chr4 | 5 | CH_lja_420 | 3 | 3 | 0.0000757827 |
| Marchantia polymorpha | scaffold_22 | 5 | CH_mpo_130 | 4 | 10 | 0.000049561 |
| Marchantia polymorpha | scaffold_50 | 5 | CH_mpo_164 | 3 | 3 | 0.000130643 |
| Marchantia polymorpha | scaffold_118 | 5 | CH_mpo_202 | 3 | 4 | 0.000521827 |
| Marchantia polymorpha | scaffold_85 | 5 | CH_mpo_70 | 7 | 51 | 0.000000129636 |
| Petunia axillaris | Peaxi162Scf00301 | 5 | CH_pax_56 | 6 | 7 | 0.00000000000165388 |
| Papaver somniferum | NW_020618825.1 | 5 | CH_pso_1139 | 3 | 5 | 0.00043465 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_538 | 4 | 6 | 0.000000499394 |
| Papaver somniferum | NC_039362.1 | 5 | CH_pso_840 | 3 | 3 | 0.000043516 |
| Phaseolus vulgaris | Chr03 | 5 | CH_pvu_421 | 3 | 3 | 0.0000683118 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_606 | 4 | 11 | 0.000026758 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_1343 | 5 | 12 | 0.00000201847 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_216 | 10 | 14 | 1.2281e-19 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_2504 | 3 | 3 | 0.000508629 |
| Solanum tuberosum | ST4.03ch08 | 5 | CH_stu_540 | 3 | 3 | 0.000028126 |
| Tripterygium wilfordii | NC_052238.1 | 5 | CH_twi_420 | 3 | 4 | 0.000184108 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 6 | CH_arhy_1058 | 4 | 16 | 0.000253368 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 6 | CH_arhy_1285 | 4 | 21 | 0.000829246 |
| Camellia sinensis var. sinensis | Chr12 | 6 | CH_camsi_1450 | 4 | 27 | 0.000743035 |
| Cannabis sativa | NC_044374.1 | 6 | CH_cansat_127 | 5 | 7 | 0.000000000588868 |
| Coffea canephora | chr8 | 6 | CH_ccan_76 | 5 | 40 | 0.00000000010653 |
| Citrus clementina | scaffold_3 | 6 | CH_ccl_586 | 3 | 4 | 0.000147411 |
| Carpinus fangiana | Cfa05 | 6 | CH_cfa_368 | 3 | 3 | 0.0000251665 |
| Carya illinoinensis | Chr11 | 6 | CH_cil_276 | 5 | 10 | 0.0000000139432 |
| Citrullus lanatus | CG_Chr02 | 6 | CH_cla_188 | 3 | 3 | 0.0000479287 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_434 | 3 | 3 | 0.0000676491 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_1227 | 3 | 4 | 0.000235744 |
| Glycine max | Gm17 | 6 | CH_gma_246 | 5 | 7 | 0.00000000602596 |
| Helianthus annuus | HanXRQChr16 | 6 | CH_han_839 | 3 | 3 | 0.0000555597 |
| Lotus japonicus | chr4 | 6 | CH_lja_420 | 3 | 3 | 0.0000757827 |
| Marchantia polymorpha | scaffold_22 | 6 | CH_mpo_130 | 4 | 10 | 0.000049561 |
| Marchantia polymorpha | scaffold_50 | 6 | CH_mpo_164 | 3 | 3 | 0.000130643 |
| Marchantia polymorpha | scaffold_118 | 6 | CH_mpo_202 | 3 | 4 | 0.000521827 |
| Marchantia polymorpha | scaffold_85 | 6 | CH_mpo_70 | 7 | 51 | 0.000000129636 |
| Petunia axillaris | Peaxi162Scf00301 | 6 | CH_pax_56 | 6 | 7 | 0.00000000000165388 |
| Papaver somniferum | NW_020618825.1 | 6 | CH_pso_1139 | 3 | 5 | 0.00043465 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_538 | 4 | 6 | 0.000000499394 |
| Papaver somniferum | NC_039362.1 | 6 | CH_pso_840 | 3 | 3 | 0.000043516 |
| Phaseolus vulgaris | Chr03 | 6 | CH_pvu_421 | 3 | 3 | 0.0000683118 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_606 | 4 | 11 | 0.000026758 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_1343 | 5 | 12 | 0.00000201847 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_216 | 10 | 14 | 1.2281e-19 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_2504 | 3 | 3 | 0.000508629 |
| Solanum tuberosum | ST4.03ch08 | 6 | CH_stu_540 | 3 | 3 | 0.000028126 |
| Tripterygium wilfordii | NC_052238.1 | 6 | CH_twi_420 | 3 | 4 | 0.000184108 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |