Functional clusters
Information
- Type InterPro
- Description LRAT domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_322 | 3 | 5 | 0.00000228668 |
| Brassica carinata | Contig804 | 5 | CH_bca_186 | 5 | 8 | 0.0000000000104082 |
| Brassica carinata | ChrB01 | 5 | CH_bca_57 | 6 | 6 | 4.77108e-17 |
| Brassica carinata | ChrC04 | 5 | CH_bca_8 | 10 | 13 | 3.78329e-29 |
| Brassica napus | A10 | 5 | CH_bna_589 | 3 | 3 | 0.00000104602 |
| Brassica napus | C09 | 5 | CH_bna_714 | 3 | 4 | 0.00000418342 |
| Brassica oleracea | C3 | 5 | CH_bol_104 | 4 | 4 | 0.00000000007491 |
| Brassica oleracea | C9 | 5 | CH_bol_124 | 4 | 5 | 0.0000000003745 |
| Camellia sinensis var. sinensis | Chr14 | 5 | CH_camsi_379 | 4 | 12 | 0.0000000100155 |
| Cannabis sativa | NC_044374.1 | 5 | CH_cansat_318 | 3 | 6 | 0.0000108602 |
| Capsicum annuum | PGAv.1.6.scaffold289 | 5 | CH_can_493 | 3 | 8 | 0.0000320723 |
| Citrus clementina | scaffold_6 | 5 | CH_ccl_357 | 3 | 4 | 0.000000807417 |
| Ceratophyllum demersum | 7 | 5 | CH_cde_147 | 3 | 5 | 0.00000523797 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_553 | 2 | 2 | 0.000454408 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_16 | 9 | 9 | 3.69998e-27 |
| Carya illinoinensis | Chr04 | 5 | CH_cil_807 | 2 | 2 | 0.000619828 |
| Citrullus lanatus | CG_Chr05 | 5 | CH_cla_340 | 2 | 2 | 0.000532269 |
| Corchorus olitorius | AWUE01020375.1 | 5 | CH_col_217 | 2 | 2 | 0.000876296 |
| Davidia involucrata | GWHABJS00000017 | 5 | CH_din_394 | 3 | 8 | 0.0000117592 |
| Durio zibethinus | NW_019168004.1 | 5 | CH_dzi_18 | 9 | 15 | 7.56031e-25 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 5 | CH_eca_12 | 8 | 10 | 2.57091e-24 |
| Eucalyptus grandis | Chr07 | 5 | CH_egr_408 | 5 | 7 | 0.00000000000390147 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_907 | 4 | 26 | 0.00000443011 |
| Erythranthe guttata | scaffold_10 | 5 | CH_egut_529 | 3 | 10 | 0.0000800564 |
| Gossypium hirsutum | D08 | 5 | CH_ghi_151 | 6 | 10 | 0.00000000000000248442 |
| Gossypium hirsutum | A08 | 5 | CH_ghi_230 | 5 | 8 | 0.00000000000330856 |
| Glycine max | Gm18 | 5 | CH_gma_355 | 3 | 3 | 0.000000259319 |
| Gossypium raimondii | Chr04 | 5 | CH_gra_128 | 5 | 9 | 0.00000000000196638 |
| Helianthus annuus | HanXRQChr03 | 5 | CH_han_8 | 12 | 15 | 3.84856e-36 |
| Hydrangea macrophylla | Hma1.2p1_0786F.1 | 5 | CH_hma_233 | 3 | 3 | 0.0000211029 |
| Hydrangea macrophylla | Hma1.2p1_0085F.1 | 5 | CH_hma_40 | 5 | 5 | 0.0000000000177131 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 5 | CH_lsa_334 | 3 | 3 | 0.0000000792629 |
| Magnolia biondii | Chr05 | 5 | CH_mbi_113 | 7 | 49 | 0.0000000000000178386 |
| Manihot esculenta | Chromosome09 | 5 | CH_mes_316 | 3 | 3 | 0.000000313221 |
| Nelumbo nucifera | chr2 | 5 | CH_nnu_401 | 3 | 11 | 0.0000688285 |
| Nicotiana tabacum | Nitab4.5_0000357 | 5 | CH_nta_318 | 2 | 2 | 0.000658364 |
| Petunia axillaris | Peaxi162Scf00117 | 5 | CH_pax_702 | 2 | 2 | 0.000703556 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_302 | 3 | 4 | 0.00000283722 |
| Punica granatum | NC_045131.1 | 5 | CH_pgr_337 | 3 | 5 | 0.00000709158 |
| Prunus persica | Pp06 | 5 | CH_ppe_542 | 3 | 11 | 0.0000275191 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_340 | 3 | 9 | 0.00000685368 |
| Quercus lobata | CM012294 | 5 | CH_qlo_241 | 8 | 48 | 5.72928e-17 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_625 | 3 | 3 | 0.000000286069 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_711 | 4 | 30 | 0.00000109062 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_281 | 4 | 8 | 0.000000000846264 |
| Salvia bowleyana | GWHASIU00000002 | 5 | CH_sbo_9 | 19 | 78 | 1.17366e-41 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_1018 | 4 | 14 | 0.0000000436939 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_1288 | 3 | 4 | 0.00000119594 |
| Schrenkiella parvula | ch6-6 | 5 | CH_spa_123 | 3 | 3 | 0.000000325462 |
| Trochodendron aralioides | group7 | 5 | CH_tar_257 | 3 | 3 | 0.000000108135 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_24 | 10 | 15 | 3.87611e-27 |
| Tarenaya hassleriana | NW_010965122.1 | 5 | CH_tha_341 | 2 | 2 | 0.00069847 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_95 | 4 | 5 | 0.0000000000975958 |
| Tripterygium wilfordii | NC_052244.1 | 5 | CH_twi_188 | 3 | 3 | 0.000000261091 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_322 | 3 | 5 | 0.00000228668 |
| Brassica carinata | Contig804 | 6 | CH_bca_186 | 5 | 8 | 0.0000000000104082 |
| Brassica carinata | ChrB01 | 6 | CH_bca_57 | 6 | 6 | 4.77108e-17 |
| Brassica carinata | ChrC04 | 6 | CH_bca_8 | 10 | 13 | 3.78329e-29 |
| Brassica napus | A10 | 6 | CH_bna_589 | 3 | 3 | 0.00000104602 |
| Brassica napus | C09 | 6 | CH_bna_714 | 3 | 4 | 0.00000418342 |
| Brassica oleracea | C3 | 6 | CH_bol_104 | 4 | 4 | 0.00000000007491 |
| Brassica oleracea | C9 | 6 | CH_bol_124 | 4 | 5 | 0.0000000003745 |
| Camellia sinensis var. sinensis | Chr14 | 6 | CH_camsi_379 | 4 | 12 | 0.0000000100155 |
| Cannabis sativa | NC_044374.1 | 6 | CH_cansat_318 | 3 | 6 | 0.0000108602 |
| Capsicum annuum | PGAv.1.6.scaffold289 | 6 | CH_can_493 | 3 | 8 | 0.0000320723 |
| Citrus clementina | scaffold_6 | 6 | CH_ccl_357 | 3 | 4 | 0.000000807417 |
| Ceratophyllum demersum | 7 | 6 | CH_cde_147 | 3 | 5 | 0.00000523797 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_553 | 2 | 2 | 0.000454408 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_16 | 9 | 9 | 3.69998e-27 |
| Carya illinoinensis | Chr04 | 6 | CH_cil_807 | 2 | 2 | 0.000619828 |
| Citrullus lanatus | CG_Chr05 | 6 | CH_cla_340 | 2 | 2 | 0.000532269 |
| Corchorus olitorius | AWUE01020375.1 | 6 | CH_col_217 | 2 | 2 | 0.000876296 |
| Davidia involucrata | GWHABJS00000017 | 6 | CH_din_394 | 3 | 8 | 0.0000117592 |
| Durio zibethinus | NW_019168004.1 | 6 | CH_dzi_18 | 9 | 15 | 7.56031e-25 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 6 | CH_eca_12 | 8 | 10 | 2.57091e-24 |
| Eucalyptus grandis | Chr07 | 6 | CH_egr_408 | 5 | 7 | 0.00000000000390147 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_907 | 4 | 26 | 0.00000443011 |
| Erythranthe guttata | scaffold_10 | 6 | CH_egut_529 | 3 | 10 | 0.0000800564 |
| Gossypium hirsutum | D08 | 6 | CH_ghi_151 | 6 | 10 | 0.00000000000000248442 |
| Gossypium hirsutum | A08 | 6 | CH_ghi_230 | 5 | 8 | 0.00000000000330856 |
| Glycine max | Gm18 | 6 | CH_gma_355 | 3 | 3 | 0.000000259319 |
| Gossypium raimondii | Chr04 | 6 | CH_gra_128 | 5 | 9 | 0.00000000000196638 |
| Helianthus annuus | HanXRQChr03 | 6 | CH_han_8 | 12 | 15 | 3.84856e-36 |
| Hydrangea macrophylla | Hma1.2p1_0786F.1 | 6 | CH_hma_233 | 3 | 3 | 0.0000211029 |
| Hydrangea macrophylla | Hma1.2p1_0085F.1 | 6 | CH_hma_40 | 5 | 5 | 0.0000000000177131 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 6 | CH_lsa_334 | 3 | 3 | 0.0000000792629 |
| Magnolia biondii | Chr05 | 6 | CH_mbi_113 | 7 | 49 | 0.0000000000000178386 |
| Manihot esculenta | Chromosome09 | 6 | CH_mes_316 | 3 | 3 | 0.000000313221 |
| Nelumbo nucifera | chr2 | 6 | CH_nnu_401 | 3 | 11 | 0.0000688285 |
| Nicotiana tabacum | Nitab4.5_0000357 | 6 | CH_nta_318 | 2 | 2 | 0.000658364 |
| Petunia axillaris | Peaxi162Scf00117 | 6 | CH_pax_702 | 2 | 2 | 0.000703556 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_302 | 3 | 4 | 0.00000283722 |
| Punica granatum | NC_045131.1 | 6 | CH_pgr_337 | 3 | 5 | 0.00000709158 |
| Prunus persica | Pp06 | 6 | CH_ppe_542 | 3 | 11 | 0.0000275191 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_340 | 3 | 9 | 0.00000685368 |
| Quercus lobata | CM012294 | 6 | CH_qlo_241 | 8 | 48 | 5.72928e-17 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_625 | 3 | 3 | 0.000000286069 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_711 | 4 | 30 | 0.00000109062 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_281 | 4 | 8 | 0.000000000846264 |
| Salvia bowleyana | GWHASIU00000002 | 6 | CH_sbo_9 | 19 | 78 | 1.17366e-41 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_1018 | 4 | 14 | 0.0000000436939 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_1288 | 3 | 4 | 0.00000119594 |
| Schrenkiella parvula | ch6-6 | 6 | CH_spa_123 | 3 | 3 | 0.000000325462 |
| Trochodendron aralioides | group7 | 6 | CH_tar_257 | 3 | 3 | 0.000000108135 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_24 | 10 | 15 | 3.87611e-27 |
| Tarenaya hassleriana | NW_010965122.1 | 6 | CH_tha_341 | 2 | 2 | 0.00069847 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_95 | 4 | 5 | 0.0000000000975958 |
| Tripterygium wilfordii | NC_052244.1 | 6 | CH_twi_188 | 3 | 3 | 0.000000261091 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |