Functional clusters

Information

  • Type InterPro
  • Description Late embryogenesis abundant protein, SMP subgroup domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_8 5 CH_aly_678 2 2 0.000660044
Amaranthus hybridus AmaHy_arrow1_Scaffold_11 5 CH_amhyb_54 4 5 0.000000000313114
Aquilegia oxysepala CHR02 5 CH_aox_62 4 4 0.0000000000232151
Arabidopsis thaliana Chr5 5 CH_ath_555 2 2 0.000429738
Beta vulgaris Chr5_EL10_PGA_scaffold2 5 CH_bvu_56 5 6 0.000000000000118411
Cannabis sativa NC_044376.1 5 CH_cansat_324 3 12 0.0000142189
Capsicum annuum PGAv.1.6.scaffold1094 5 CH_can_690 2 2 0.000247831
Citrus clementina scaffold_9 5 CH_ccl_711 2 2 0.000492187
Corchorus olitorius AWUE01014114.1 5 CH_col_216 2 2 0.000876296
Chenopodium quinoa C_Quinoa_Scaffold_1703 5 CH_cqu_170 4 4 0.00000000010532
Chenopodium quinoa C_Quinoa_Scaffold_1762 5 CH_cqu_171 4 4 0.00000000010532
Daucus carota DCARv2_Chr3 5 CH_dca_206 3 3 0.000000122031
Durio zibethinus NW_019167938.1 5 CH_dzi_87 4 4 0.0000000000104553
Eucalyptus grandis Chr02 5 CH_egr_1409 2 2 0.000877912
Fragaria vesca Fvb6 5 CH_fve_712 2 2 0.000353461
Gossypium hirsutum A11 5 CH_ghi_536 3 3 0.000000486611
Gossypium hirsutum D11 5 CH_ghi_537 3 3 0.000000486611
Glycine max Gm20 5 CH_gma_872 2 2 0.000569336
Gossypium raimondii Chr07 5 CH_gra_265 3 3 0.000000241431
Manihot esculenta Chromosome05 5 CH_mes_721 2 2 0.000915947
Medicago truncatula chr2 5 CH_mtr_1343 2 2 0.000616295
Nelumbo nucifera chr4 5 CH_nnu_557 2 2 0.000481684
Nicotiana tabacum Nitab4.5_0000316 5 CH_nta_317 2 2 0.000658364
Oryza sativa ssp. japonica chr03 5 CH_osa_747 2 2 0.000792184
Petunia axillaris Peaxi162Scf00092 5 CH_pax_627 2 2 0.000422134
Pisum sativum chr5LG3 5 CH_psa_209 3 4 0.0000000653034
Quercus lobata 6 5 CH_qlo_972 3 5 0.00000139916
Rosa chinensis RcHm_v2.0_Chr3 5 CH_rch_1236 2 2 0.000239192
Solanum lycopersicum SL4.0ch09 5 CH_sly_804 2 2 0.000352164
Solanum pennellii Spenn-ch09 5 CH_spe_718 2 2 0.000266874
Theobroma cacao Chromosome_1 5 CH_tca_685 2 2 0.000439432
Tarenaya hassleriana NW_010969548.1 5 CH_tha_340 2 2 0.00069847
Arabidopsis lyrata scaffold_8 6 CH_aly_678 2 2 0.000660044
Amaranthus hybridus AmaHy_arrow1_Scaffold_11 6 CH_amhyb_54 4 5 0.000000000313114
Aquilegia oxysepala CHR02 6 CH_aox_62 4 4 0.0000000000232151
Arabidopsis thaliana Chr5 6 CH_ath_555 2 2 0.000429738
Beta vulgaris Chr5_EL10_PGA_scaffold2 6 CH_bvu_56 5 6 0.000000000000118411
Cannabis sativa NC_044376.1 6 CH_cansat_324 3 12 0.0000142189
Capsicum annuum PGAv.1.6.scaffold1094 6 CH_can_690 2 2 0.000247831
Citrus clementina scaffold_9 6 CH_ccl_711 2 2 0.000492187
Corchorus olitorius AWUE01014114.1 6 CH_col_216 2 2 0.000876296
Chenopodium quinoa C_Quinoa_Scaffold_1703 6 CH_cqu_170 4 4 0.00000000010532
Chenopodium quinoa C_Quinoa_Scaffold_1762 6 CH_cqu_171 4 4 0.00000000010532
Daucus carota DCARv2_Chr3 6 CH_dca_206 3 3 0.000000122031
Durio zibethinus NW_019167938.1 6 CH_dzi_87 4 4 0.0000000000104553
Eucalyptus grandis Chr02 6 CH_egr_1409 2 2 0.000877912
Fragaria vesca Fvb6 6 CH_fve_712 2 2 0.000353461
Gossypium hirsutum A11 6 CH_ghi_536 3 3 0.000000486611
Gossypium hirsutum D11 6 CH_ghi_537 3 3 0.000000486611
Glycine max Gm20 6 CH_gma_872 2 2 0.000569336
Gossypium raimondii Chr07 6 CH_gra_265 3 3 0.000000241431
Manihot esculenta Chromosome05 6 CH_mes_721 2 2 0.000915947
Medicago truncatula chr2 6 CH_mtr_1343 2 2 0.000616295
Nelumbo nucifera chr4 6 CH_nnu_557 2 2 0.000481684
Nicotiana tabacum Nitab4.5_0000316 6 CH_nta_317 2 2 0.000658364
Oryza sativa ssp. japonica chr03 6 CH_osa_747 2 2 0.000792184
Petunia axillaris Peaxi162Scf00092 6 CH_pax_627 2 2 0.000422134
Pisum sativum chr5LG3 6 CH_psa_209 3 4 0.0000000653034
Quercus lobata 6 6 CH_qlo_972 3 5 0.00000139916
Rosa chinensis RcHm_v2.0_Chr3 6 CH_rch_1236 2 2 0.000239192
Solanum lycopersicum SL4.0ch09 6 CH_sly_804 2 2 0.000352164
Solanum pennellii Spenn-ch09 6 CH_spe_718 2 2 0.000266874
Theobroma cacao Chromosome_1 6 CH_tca_685 2 2 0.000439432
Tarenaya hassleriana NW_010969548.1 6 CH_tha_340 2 2 0.00069847

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001