Functional clusters
Information
- Type InterPro
- Description Alliinase, C-terminal
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr9 | 5 | CH_acertr_883 | 2 | 2 | 0.000422982 |
| Avicennia marina | ScioBoG_4119_HRSCAF_4138 | 5 | CH_ama_232 | 2 | 2 | 0.000862218 |
| Brassica oleracea | C5 | 5 | CH_bol_849 | 2 | 2 | 0.000686409 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 5 | CH_bvu_193 | 3 | 3 | 0.000000205643 |
| Corylus avellana | 3 | 5 | CH_cav_339 | 3 | 6 | 0.00000352574 |
| Coffea canephora | chr10 | 5 | CH_ccan_8 | 6 | 46 | 7.18848e-18 |
| Corchorus olitorius | AWUE01015287.1 | 5 | CH_col_62 | 4 | 16 | 0.000000135897 |
| Davidia involucrata | GWHABJS00000011 | 5 | CH_din_289 | 3 | 4 | 0.000000525223 |
| Eutrema salsugineum | scaffold_5 | 5 | CH_esa_252 | 3 | 7 | 0.00000608596 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_789 | 2 | 2 | 0.000589102 |
| Glycine max | Gm16 | 5 | CH_gma_303 | 5 | 50 | 0.000000042173 |
| Helianthus annuus | HanXRQChr11 | 5 | CH_han_30 | 10 | 17 | 5.18826e-26 |
| Helianthus annuus | HanXRQChr13 | 5 | CH_han_427 | 4 | 7 | 0.0000000643227 |
| Lupinus albus | Lalb_Chr16 | 5 | CH_lal_769 | 2 | 2 | 0.000787236 |
| Lotus japonicus | chr2 | 5 | CH_lja_166 | 3 | 3 | 0.0000000767031 |
| Magnolia biondii | Chr16 | 5 | CH_mbi_147 | 4 | 4 | 0.00000000000171839 |
| Malus domestica | Chr10 | 5 | CH_mdo_289 | 4 | 8 | 0.00000000144243 |
| Manihot esculenta | Chromosome18 | 5 | CH_mes_346 | 3 | 5 | 0.00000111842 |
| Medicago truncatula | chr5 | 5 | CH_mtr_1166 | 2 | 2 | 0.000246518 |
| Olea europaea | chr11 | 5 | CH_oeu_664 | 2 | 2 | 0.000800683 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_288 | 3 | 5 | 0.00000168876 |
| Prunus persica | Pp08 | 5 | CH_ppe_87 | 6 | 6 | 4.36726e-18 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_1321 | 2 | 2 | 0.000398653 |
| Rhododendron simsii | chr12 | 5 | CH_rsi_1030 | 2 | 2 | 0.000967961 |
| Striga asiatica | scaffold82 | 5 | CH_sas_254 | 2 | 2 | 0.000938057 |
| Salvia bowleyana | GWHASIU00000005 | 5 | CH_sbo_734 | 2 | 2 | 0.00068247 |
| Simmondsia chinensis | GWHAASQ00000002 | 5 | CH_sci_519 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_269 | 7 | 32 | 2.83193e-17 |
| Solanum tuberosum | ST4.03ch10 | 5 | CH_stu_430 | 4 | 16 | 0.00000174278 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_497 | 3 | 4 | 0.0000107115 |
| Trochodendron aralioides | group8 | 5 | CH_tar_952 | 2 | 2 | 0.000900549 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_136 | 4 | 6 | 0.00000000454803 |
| Vitis vinifera | chr18 | 5 | CH_vvi_57 | 7 | 10 | 2.19645e-19 |
| Acer truncatum | chr9 | 6 | CH_acertr_883 | 2 | 2 | 0.000422982 |
| Avicennia marina | ScioBoG_4119_HRSCAF_4138 | 6 | CH_ama_232 | 2 | 2 | 0.000862218 |
| Brassica oleracea | C5 | 6 | CH_bol_849 | 2 | 2 | 0.000686409 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 6 | CH_bvu_193 | 3 | 3 | 0.000000205643 |
| Corylus avellana | 3 | 6 | CH_cav_339 | 3 | 6 | 0.00000352574 |
| Coffea canephora | chr10 | 6 | CH_ccan_8 | 6 | 46 | 7.18848e-18 |
| Corchorus olitorius | AWUE01015287.1 | 6 | CH_col_62 | 4 | 16 | 0.000000135897 |
| Davidia involucrata | GWHABJS00000011 | 6 | CH_din_289 | 3 | 4 | 0.000000525223 |
| Eutrema salsugineum | scaffold_5 | 6 | CH_esa_252 | 3 | 7 | 0.00000608596 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_789 | 2 | 2 | 0.000589102 |
| Glycine max | Gm16 | 6 | CH_gma_303 | 5 | 50 | 0.000000042173 |
| Helianthus annuus | HanXRQChr11 | 6 | CH_han_30 | 10 | 17 | 5.18826e-26 |
| Helianthus annuus | HanXRQChr13 | 6 | CH_han_427 | 4 | 7 | 0.0000000643227 |
| Lupinus albus | Lalb_Chr16 | 6 | CH_lal_769 | 2 | 2 | 0.000787236 |
| Lotus japonicus | chr2 | 6 | CH_lja_166 | 3 | 3 | 0.0000000767031 |
| Magnolia biondii | Chr16 | 6 | CH_mbi_147 | 4 | 4 | 0.00000000000171839 |
| Malus domestica | Chr10 | 6 | CH_mdo_289 | 4 | 8 | 0.00000000144243 |
| Manihot esculenta | Chromosome18 | 6 | CH_mes_346 | 3 | 5 | 0.00000111842 |
| Medicago truncatula | chr5 | 6 | CH_mtr_1166 | 2 | 2 | 0.000246518 |
| Olea europaea | chr11 | 6 | CH_oeu_664 | 2 | 2 | 0.000800683 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_288 | 3 | 5 | 0.00000168876 |
| Prunus persica | Pp08 | 6 | CH_ppe_87 | 6 | 6 | 4.36726e-18 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_1321 | 2 | 2 | 0.000398653 |
| Rhododendron simsii | chr12 | 6 | CH_rsi_1030 | 2 | 2 | 0.000967961 |
| Striga asiatica | scaffold82 | 6 | CH_sas_254 | 2 | 2 | 0.000938057 |
| Salvia bowleyana | GWHASIU00000005 | 6 | CH_sbo_734 | 2 | 2 | 0.00068247 |
| Simmondsia chinensis | GWHAASQ00000002 | 6 | CH_sci_519 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_269 | 7 | 32 | 2.83193e-17 |
| Solanum tuberosum | ST4.03ch10 | 6 | CH_stu_430 | 4 | 16 | 0.00000174278 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_497 | 3 | 4 | 0.0000107115 |
| Trochodendron aralioides | group8 | 6 | CH_tar_952 | 2 | 2 | 0.000900549 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_136 | 4 | 6 | 0.00000000454803 |
| Vitis vinifera | chr18 | 6 | CH_vvi_57 | 7 | 10 | 2.19645e-19 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |