Functional clusters
Information
- Type InterPro
- Description COBRA, plant
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr9 | 5 | CH_acertr_148 | 4 | 4 | 0.000000000751597 |
| Actinidia chinensis | Lachesis_group3 | 5 | CH_ach_58 | 4 | 4 | 0.000000000656446 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 5 | CH_arhy_710 | 3 | 3 | 0.00000491271 |
| Amborella trichopoda | AmTr_v1.0_scaffold00047 | 5 | CH_atr_229 | 3 | 3 | 0.000000331332 |
| Brassica carinata | ChrC03 | 5 | CH_bca_1118 | 3 | 4 | 0.0000195706 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 5 | CH_bvu_232 | 3 | 3 | 0.000000863699 |
| Camellia sinensis var. sinensis | Chr2 | 5 | CH_camsi_1244 | 3 | 11 | 0.000290861 |
| Capsicum annuum | PGAv.1.6.scaffold1228 | 5 | CH_can_440 | 3 | 3 | 0.00000835352 |
| Cicer arietinum L. | Ca_LG1_v3 | 5 | CH_car_319 | 3 | 10 | 0.000311132 |
| Citrus clementina | scaffold_3 | 5 | CH_ccl_200 | 4 | 4 | 0.0000000003478 |
| Carpinus fangiana | Cfa08 | 5 | CH_cfa_271 | 3 | 3 | 0.00000072273 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1189 | 5 | CH_cqu_226 | 4 | 4 | 0.00000000191012 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1177 | 5 | CH_cqu_281 | 4 | 6 | 0.000000028632 |
| Daucus carota | DCARv2_Chr7 | 5 | CH_dca_287 | 3 | 3 | 0.00000222097 |
| Daucus carota | DCARv2_Chr9 | 5 | CH_dca_646 | 3 | 12 | 0.000487317 |
| Davidia involucrata | GWHABJS00000012 | 5 | CH_din_300 | 3 | 3 | 0.000000825433 |
| Durio zibethinus | NW_019167838.1 | 5 | CH_dzi_279 | 3 | 3 | 0.00000262948 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_519 | 4 | 4 | 0.000000000602105 |
| Erythranthe guttata | scaffold_8 | 5 | CH_egut_194 | 4 | 5 | 0.00000000121597 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_195 | 4 | 4 | 0.000000000613994 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_562 | 3 | 7 | 0.0000662492 |
| Glycine max | Gm18 | 5 | CH_gma_463 | 3 | 3 | 0.00000497029 |
| Helianthus annuus | HanXRQChr07 | 5 | CH_han_523 | 3 | 3 | 0.000000640626 |
| Lotus japonicus | chr1 | 5 | CH_lja_307 | 3 | 3 | 0.00000521581 |
| Lotus japonicus | chr2 | 5 | CH_lja_562 | 3 | 10 | 0.000624098 |
| Lonicera japonica | GWHAAZE00000081 | 5 | CH_lonja_307 | 4 | 4 | 0.000000000879629 |
| Magnolia biondii | Chr16 | 5 | CH_mbi_430 | 3 | 3 | 0.000000198133 |
| Malus domestica | Chr14 | 5 | CH_mdo_603 | 3 | 3 | 0.0000014668 |
| Manihot esculenta | Chromosome06 | 5 | CH_mes_361 | 3 | 3 | 0.00000159966 |
| Medicago truncatula | chr6 | 5 | CH_mtr_690 | 3 | 3 | 0.00000115214 |
| Punica granatum | NC_045134.1 | 5 | CH_pgr_299 | 3 | 3 | 0.00000241551 |
| Prunus persica | Pp05 | 5 | CH_ppe_233 | 4 | 4 | 0.00000000061649 |
| Prunus persica | Pp03 | 5 | CH_ppe_420 | 3 | 3 | 0.00000183639 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_274 | 3 | 3 | 0.000000673472 |
| Populus trichocarpa | Chr15 | 5 | CH_ptr_407 | 3 | 3 | 0.00000182416 |
| Phaseolus vulgaris | Chr08 | 5 | CH_pvu_337 | 3 | 3 | 0.00000294754 |
| Quercus lobata | 10 | 5 | CH_qlo_978 | 3 | 3 | 0.00000145542 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_484 | 4 | 7 | 0.0000000203425 |
| Salix brachista | GWHAAZH00000015 | 5 | CH_sbr_292 | 3 | 3 | 0.000000714759 |
| Sapria himalayana | scaffold2_22354274 | 5 | CH_shi_542 | 2 | 2 | 0.000571804 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_212 | 4 | 4 | 0.0000000023514 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_449 | 3 | 3 | 0.00000500744 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_167 | 4 | 4 | 0.000000000628338 |
| Trochodendron aralioides | group0 | 5 | CH_tar_442 | 3 | 4 | 0.0000209484 |
| Trochodendron aralioides | group4 | 5 | CH_tar_51 | 6 | 7 | 0.00000000000000333285 |
| Theobroma cacao | Chromosome_3 | 5 | CH_tca_131 | 5 | 6 | 0.00000000000166619 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_34 | 5 | CH_tpr_375 | 3 | 4 | 0.00000983004 |
| Vigna mungo | CM024070.1 | 5 | CH_vmu_232 | 3 | 3 | 0.00000227961 |
| Vitis vinifera | chr17 | 5 | CH_vvi_381 | 3 | 3 | 0.00000190931 |
| Acer truncatum | chr9 | 6 | CH_acertr_148 | 4 | 4 | 0.000000000751597 |
| Actinidia chinensis | Lachesis_group3 | 6 | CH_ach_58 | 4 | 4 | 0.000000000656446 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 6 | CH_arhy_710 | 3 | 3 | 0.00000491271 |
| Amborella trichopoda | AmTr_v1.0_scaffold00047 | 6 | CH_atr_229 | 3 | 3 | 0.000000331332 |
| Brassica carinata | ChrC03 | 6 | CH_bca_1118 | 3 | 4 | 0.0000195706 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 6 | CH_bvu_232 | 3 | 3 | 0.000000863699 |
| Camellia sinensis var. sinensis | Chr2 | 6 | CH_camsi_1244 | 3 | 11 | 0.000290861 |
| Capsicum annuum | PGAv.1.6.scaffold1228 | 6 | CH_can_440 | 3 | 3 | 0.00000835352 |
| Cicer arietinum L. | Ca_LG1_v3 | 6 | CH_car_319 | 3 | 10 | 0.000311132 |
| Citrus clementina | scaffold_3 | 6 | CH_ccl_200 | 4 | 4 | 0.0000000003478 |
| Carpinus fangiana | Cfa08 | 6 | CH_cfa_271 | 3 | 3 | 0.00000072273 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1189 | 6 | CH_cqu_226 | 4 | 4 | 0.00000000191012 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1177 | 6 | CH_cqu_281 | 4 | 6 | 0.000000028632 |
| Daucus carota | DCARv2_Chr7 | 6 | CH_dca_287 | 3 | 3 | 0.00000222097 |
| Daucus carota | DCARv2_Chr9 | 6 | CH_dca_646 | 3 | 12 | 0.000487317 |
| Davidia involucrata | GWHABJS00000012 | 6 | CH_din_300 | 3 | 3 | 0.000000825433 |
| Durio zibethinus | NW_019167838.1 | 6 | CH_dzi_279 | 3 | 3 | 0.00000262948 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_519 | 4 | 4 | 0.000000000602105 |
| Erythranthe guttata | scaffold_8 | 6 | CH_egut_194 | 4 | 5 | 0.00000000121597 |
| Fragaria x ananassa | Fvb6-3 | 6 | CH_fan_1043 | 3 | 8 | 0.000435913 |
| Fragaria x ananassa | Fvb6-1 | 6 | CH_fan_1044 | 3 | 8 | 0.000435913 |
| Fragaria x ananassa | Fvb5-1 | 6 | CH_fan_259 | 4 | 5 | 0.0000000155029 |
| Fragaria x ananassa | Fvb3-4 | 6 | CH_fan_607 | 3 | 3 | 0.00000779615 |
| Fragaria x ananassa | Fvb6-2 | 6 | CH_fan_946 | 3 | 7 | 0.00027253 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_195 | 4 | 4 | 0.000000000613994 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_562 | 3 | 7 | 0.0000662492 |
| Glycine max | Gm18 | 6 | CH_gma_463 | 3 | 3 | 0.00000497029 |
| Helianthus annuus | HanXRQChr07 | 6 | CH_han_523 | 3 | 3 | 0.000000640626 |
| Lotus japonicus | chr1 | 6 | CH_lja_307 | 3 | 3 | 0.00000521581 |
| Lotus japonicus | chr2 | 6 | CH_lja_562 | 3 | 10 | 0.000624098 |
| Lonicera japonica | GWHAAZE00000081 | 6 | CH_lonja_307 | 4 | 4 | 0.000000000879629 |
| Magnolia biondii | Chr16 | 6 | CH_mbi_430 | 3 | 3 | 0.000000198133 |
| Malus domestica | Chr14 | 6 | CH_mdo_603 | 3 | 3 | 0.0000014668 |
| Manihot esculenta | Chromosome06 | 6 | CH_mes_361 | 3 | 3 | 0.00000159966 |
| Medicago truncatula | chr6 | 6 | CH_mtr_690 | 3 | 3 | 0.00000115214 |
| Punica granatum | NC_045134.1 | 6 | CH_pgr_299 | 3 | 3 | 0.00000241551 |
| Prunus persica | Pp05 | 6 | CH_ppe_233 | 4 | 4 | 0.00000000061649 |
| Prunus persica | Pp03 | 6 | CH_ppe_420 | 3 | 3 | 0.00000183639 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_274 | 3 | 3 | 0.000000673472 |
| Populus trichocarpa | Chr15 | 6 | CH_ptr_407 | 3 | 3 | 0.00000182416 |
| Phaseolus vulgaris | Chr08 | 6 | CH_pvu_337 | 3 | 3 | 0.00000294754 |
| Quercus lobata | 10 | 6 | CH_qlo_978 | 3 | 3 | 0.00000145542 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_484 | 4 | 7 | 0.0000000203425 |
| Salix brachista | GWHAAZH00000015 | 6 | CH_sbr_292 | 3 | 3 | 0.000000714759 |
| Sapria himalayana | scaffold2_22354274 | 6 | CH_shi_542 | 2 | 2 | 0.000571804 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_212 | 4 | 4 | 0.0000000023514 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_449 | 3 | 3 | 0.00000500744 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_167 | 4 | 4 | 0.000000000628338 |
| Trochodendron aralioides | group0 | 6 | CH_tar_442 | 3 | 4 | 0.0000209484 |
| Trochodendron aralioides | group4 | 6 | CH_tar_51 | 6 | 7 | 0.00000000000000333285 |
| Theobroma cacao | Chromosome_3 | 6 | CH_tca_131 | 5 | 6 | 0.00000000000166619 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_34 | 6 | CH_tpr_375 | 3 | 4 | 0.00000983004 |
| Vigna mungo | CM024070.1 | 6 | CH_vmu_232 | 3 | 3 | 0.00000227961 |
| Vitis vinifera | chr17 | 6 | CH_vvi_381 | 3 | 3 | 0.00000190931 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |