Functional clusters
Information
- Type InterPro
- Description Protein of unknown function DUF599
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_11 | 5 | CH_amhyb_459 | 2 | 2 | 0.000841751 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 5 | CH_arhy_674 | 3 | 3 | 0.00000272122 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 5 | CH_atr_638 | 2 | 2 | 0.000794407 |
| Brassica carinata | Contig525 | 5 | CH_bca_758 | 3 | 3 | 0.00000105557 |
| Cannabis sativa | NC_044374.1 | 5 | CH_cansat_100 | 5 | 15 | 0.000000000052695 |
| Ceratophyllum demersum | 9 | 5 | CH_cde_378 | 3 | 32 | 0.000462781 |
| Carpinus fangiana | Cfa03 | 5 | CH_cfa_327 | 3 | 4 | 0.00000567709 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2702 | 5 | CH_cqu_455 | 3 | 3 | 0.0000018859 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3500 | 5 | CH_cqu_528 | 3 | 4 | 0.00000754168 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_290 | 6 | 7 | 0.00000000000000586869 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_184 | 4 | 4 | 0.000000000303624 |
| Gossypium hirsutum | A12 | 5 | CH_ghi_628 | 3 | 3 | 0.00000278063 |
| Gossypium hirsutum | D12 | 5 | CH_ghi_715 | 3 | 4 | 0.0000111198 |
| Glycine max | Gm09 | 5 | CH_gma_428 | 3 | 3 | 0.00000246353 |
| Glycine max | Gm08 | 5 | CH_gma_429 | 3 | 3 | 0.00000246353 |
| Gossypium raimondii | Chr08 | 5 | CH_gra_306 | 3 | 3 | 0.00000094848 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_274 | 4 | 5 | 0.000000000428418 |
| Lotus japonicus | chr4 | 5 | CH_lja_265 | 3 | 3 | 0.00000168747 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 5 | CH_lsa_405 | 3 | 3 | 0.000000653919 |
| Malus domestica | Chr05 | 5 | CH_mdo_151 | 5 | 5 | 0.000000000000659276 |
| Malus domestica | Chr07 | 5 | CH_mdo_171 | 5 | 6 | 0.00000000000395439 |
| Malus domestica | Chr10 | 5 | CH_mdo_673 | 3 | 3 | 0.00000436589 |
| Nelumbo nucifera | chr4 | 5 | CH_nnu_128 | 4 | 5 | 0.00000000305049 |
| Punica granatum | NC_045130.1 | 5 | CH_pgr_278 | 3 | 3 | 0.0000010135 |
| Prunus persica | Pp04 | 5 | CH_ppe_410 | 3 | 3 | 0.00000137729 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_317 | 3 | 4 | 0.00000359113 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_492 | 3 | 9 | 0.0000753374 |
| Populus trichocarpa | Chr15 | 5 | CH_ptr_793 | 2 | 2 | 0.000867002 |
| Phaseolus vulgaris | Chr02 | 5 | CH_pvu_293 | 3 | 3 | 0.000000680203 |
| Quercus lobata | 9 | 5 | CH_qlo_288 | 6 | 8 | 0.00000000000000428879 |
| Quercus lobata | 5 | 5 | CH_qlo_820 | 4 | 9 | 0.000000158943 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_391 | 5 | 21 | 0.000000000769699 |
| Salix brachista | GWHAAZH00000006 | 5 | CH_sbr_659 | 2 | 2 | 0.00063014 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_718 | 5 | 10 | 0.000000000698709 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_969 | 4 | 5 | 0.0000000259155 |
| Selaginella moellendorffii | scaffold_24 | 5 | CH_smo_273 | 2 | 2 | 0.000280112 |
| Trochodendron aralioides | group0 | 5 | CH_tar_380 | 3 | 3 | 0.00000302778 |
| Trochodendron aralioides | group3 | 5 | CH_tar_414 | 4 | 22 | 0.00000859422 |
| Theobroma cacao | Chromosome_7 | 5 | CH_tca_399 | 3 | 4 | 0.00000270296 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_244 | 3 | 3 | 0.000000481346 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_309 | 3 | 3 | 0.00000370452 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_11 | 6 | CH_amhyb_459 | 2 | 2 | 0.000841751 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 6 | CH_arhy_674 | 3 | 3 | 0.00000272122 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 6 | CH_atr_638 | 2 | 2 | 0.000794407 |
| Brassica carinata | Contig525 | 6 | CH_bca_758 | 3 | 3 | 0.00000105557 |
| Cannabis sativa | NC_044374.1 | 6 | CH_cansat_100 | 5 | 15 | 0.000000000052695 |
| Ceratophyllum demersum | 9 | 6 | CH_cde_378 | 3 | 32 | 0.000462781 |
| Carpinus fangiana | Cfa03 | 6 | CH_cfa_327 | 3 | 4 | 0.00000567709 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2702 | 6 | CH_cqu_455 | 3 | 3 | 0.0000018859 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3500 | 6 | CH_cqu_528 | 3 | 4 | 0.00000754168 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_290 | 6 | 7 | 0.00000000000000586869 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_184 | 4 | 4 | 0.000000000303624 |
| Gossypium hirsutum | A12 | 6 | CH_ghi_628 | 3 | 3 | 0.00000278063 |
| Gossypium hirsutum | D12 | 6 | CH_ghi_715 | 3 | 4 | 0.0000111198 |
| Glycine max | Gm09 | 6 | CH_gma_428 | 3 | 3 | 0.00000246353 |
| Glycine max | Gm08 | 6 | CH_gma_429 | 3 | 3 | 0.00000246353 |
| Gossypium raimondii | Chr08 | 6 | CH_gra_306 | 3 | 3 | 0.00000094848 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_274 | 4 | 5 | 0.000000000428418 |
| Lotus japonicus | chr4 | 6 | CH_lja_265 | 3 | 3 | 0.00000168747 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 6 | CH_lsa_405 | 3 | 3 | 0.000000653919 |
| Malus domestica | Chr05 | 6 | CH_mdo_151 | 5 | 5 | 0.000000000000659276 |
| Malus domestica | Chr07 | 6 | CH_mdo_171 | 5 | 6 | 0.00000000000395439 |
| Malus domestica | Chr10 | 6 | CH_mdo_673 | 3 | 3 | 0.00000436589 |
| Nelumbo nucifera | chr4 | 6 | CH_nnu_128 | 4 | 5 | 0.00000000305049 |
| Punica granatum | NC_045130.1 | 6 | CH_pgr_278 | 3 | 3 | 0.0000010135 |
| Prunus persica | Pp04 | 6 | CH_ppe_410 | 3 | 3 | 0.00000137729 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_317 | 3 | 4 | 0.00000359113 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_492 | 3 | 9 | 0.0000753374 |
| Populus trichocarpa | Chr15 | 6 | CH_ptr_793 | 2 | 2 | 0.000867002 |
| Phaseolus vulgaris | Chr02 | 6 | CH_pvu_293 | 3 | 3 | 0.000000680203 |
| Quercus lobata | 9 | 6 | CH_qlo_288 | 6 | 8 | 0.00000000000000428879 |
| Quercus lobata | 5 | 6 | CH_qlo_820 | 4 | 9 | 0.000000158943 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_391 | 5 | 21 | 0.000000000769699 |
| Salix brachista | GWHAAZH00000006 | 6 | CH_sbr_659 | 2 | 2 | 0.00063014 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_718 | 5 | 10 | 0.000000000698709 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_969 | 4 | 5 | 0.0000000259155 |
| Selaginella moellendorffii | scaffold_24 | 6 | CH_smo_273 | 2 | 2 | 0.000280112 |
| Trochodendron aralioides | group0 | 6 | CH_tar_380 | 3 | 3 | 0.00000302778 |
| Trochodendron aralioides | group3 | 6 | CH_tar_414 | 4 | 22 | 0.00000859422 |
| Theobroma cacao | Chromosome_7 | 6 | CH_tca_399 | 3 | 4 | 0.00000270296 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_244 | 3 | 3 | 0.000000481346 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_309 | 3 | 3 | 0.00000370452 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |