Functional clusters
Information
- Type InterPro
- Description Extensin domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica napus | C03 | 5 | CH_bna_604 | 3 | 3 | 0.00000118866 |
| Brassica oleracea | C3 | 5 | CH_bol_312 | 3 | 3 | 0.000000583347 |
| Capsicum annuum | PGAv.1.6.scaffold484 | 5 | CH_can_758 | 2 | 4 | 0.000495622 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_171 | 4 | 5 | 0.00000000290171 |
| Daucus carota | DCARv2_Chr4 | 5 | CH_dca_518 | 2 | 2 | 0.000191333 |
| Davidia involucrata | GWHABJS00000011 | 5 | CH_din_648 | 2 | 2 | 0.000300075 |
| Durio zibethinus | NW_019167949.1 | 5 | CH_dzi_634 | 2 | 2 | 0.000973326 |
| Durio zibethinus | NW_019167871.1 | 5 | CH_dzi_86 | 4 | 4 | 0.0000000000104553 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 5 | CH_eca_848 | 2 | 3 | 0.000807658 |
| Fragaria vesca | Fvb4 | 5 | CH_fve_413 | 3 | 9 | 0.0000017486 |
| Glycine max | Gm16 | 5 | CH_gma_635 | 2 | 2 | 0.000113867 |
| Lupinus albus | Lalb_Chr19 | 5 | CH_lal_504 | 2 | 2 | 0.000157447 |
| Lotus japonicus | chr2 | 5 | CH_lja_511 | 2 | 4 | 0.000429016 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 5 | CH_lsa_333 | 3 | 3 | 0.0000000792629 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 5 | CH_lsa_480 | 3 | 8 | 0.00000443687 |
| Marchantia polymorpha | scaffold_62 | 5 | CH_mpo_22 | 5 | 5 | 0.0000000000000234405 |
| Medicago truncatula | chr1 | 5 | CH_mtr_670 | 3 | 5 | 0.000000886118 |
| Medicago truncatula | chr6 | 5 | CH_mtr_760 | 3 | 7 | 0.0000031009 |
| Nelumbo nucifera | chr7 | 5 | CH_nnu_504 | 2 | 2 | 0.00028901 |
| Nicotiana tabacum | Nitab4.5_0000032 | 5 | CH_nta_45 | 4 | 7 | 0.0000000006935 |
| Petunia axillaris | Peaxi162Scf00263 | 5 | CH_pax_200 | 3 | 3 | 0.000000148503 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_298 | 4 | 41 | 0.00000150445 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_1198 | 2 | 2 | 0.000630822 |
| Papaver somniferum | NW_020620714.1 | 5 | CH_pso_434 | 3 | 3 | 0.0000000426366 |
| Sechium edule | LG07 | 5 | CH_sed_153 | 3 | 4 | 0.000000122149 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_2060 | 2 | 2 | 0.000146145 |
| Solanum lycopersicum | SL4.0ch12 | 5 | CH_sly_438 | 3 | 6 | 0.00000361607 |
| Solanum pennellii | Spenn-ch04 | 5 | CH_spe_621 | 2 | 3 | 0.000133434 |
| Solanum tuberosum | ST4.03ch04 | 5 | CH_stu_66 | 6 | 9 | 1.87029e-17 |
| Theobroma cacao | Chromosome_9 | 5 | CH_tca_202 | 4 | 12 | 0.000000000583267 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 5 | CH_tpr_683 | 2 | 2 | 0.000454184 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 5 | CH_tpr_684 | 2 | 2 | 0.000454184 |
| Brassica napus | C03 | 6 | CH_bna_604 | 3 | 3 | 0.00000118866 |
| Brassica oleracea | C3 | 6 | CH_bol_312 | 3 | 3 | 0.000000583347 |
| Capsicum annuum | PGAv.1.6.scaffold484 | 6 | CH_can_758 | 2 | 4 | 0.000495622 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_171 | 4 | 5 | 0.00000000290171 |
| Daucus carota | DCARv2_Chr4 | 6 | CH_dca_518 | 2 | 2 | 0.000191333 |
| Davidia involucrata | GWHABJS00000011 | 6 | CH_din_648 | 2 | 2 | 0.000300075 |
| Durio zibethinus | NW_019167949.1 | 6 | CH_dzi_634 | 2 | 2 | 0.000973326 |
| Durio zibethinus | NW_019167871.1 | 6 | CH_dzi_86 | 4 | 4 | 0.0000000000104553 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 6 | CH_eca_848 | 2 | 3 | 0.000807658 |
| Fragaria x ananassa | Fvb4-3 | 6 | CH_fan_625 | 3 | 11 | 0.0000101642 |
| Fragaria vesca | Fvb4 | 6 | CH_fve_413 | 3 | 9 | 0.0000017486 |
| Glycine max | Gm16 | 6 | CH_gma_635 | 2 | 2 | 0.000113867 |
| Lupinus albus | Lalb_Chr19 | 6 | CH_lal_504 | 2 | 2 | 0.000157447 |
| Lotus japonicus | chr2 | 6 | CH_lja_511 | 2 | 4 | 0.000429016 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 6 | CH_lsa_333 | 3 | 3 | 0.0000000792629 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 6 | CH_lsa_480 | 3 | 8 | 0.00000443687 |
| Marchantia polymorpha | scaffold_62 | 6 | CH_mpo_22 | 5 | 5 | 0.0000000000000234405 |
| Medicago truncatula | chr1 | 6 | CH_mtr_670 | 3 | 5 | 0.000000886118 |
| Medicago truncatula | chr6 | 6 | CH_mtr_760 | 3 | 7 | 0.0000031009 |
| Nelumbo nucifera | chr7 | 6 | CH_nnu_504 | 2 | 2 | 0.00028901 |
| Nicotiana tabacum | Nitab4.5_0000032 | 6 | CH_nta_45 | 4 | 7 | 0.0000000006935 |
| Petunia axillaris | Peaxi162Scf00263 | 6 | CH_pax_200 | 3 | 3 | 0.000000148503 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_298 | 4 | 41 | 0.00000150445 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_1198 | 2 | 2 | 0.000630822 |
| Papaver somniferum | NW_020620714.1 | 6 | CH_pso_434 | 3 | 3 | 0.0000000426366 |
| Sechium edule | LG07 | 6 | CH_sed_153 | 3 | 4 | 0.000000122149 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_2060 | 2 | 2 | 0.000146145 |
| Solanum lycopersicum | SL4.0ch12 | 6 | CH_sly_438 | 3 | 6 | 0.00000361607 |
| Solanum pennellii | Spenn-ch04 | 6 | CH_spe_621 | 2 | 3 | 0.000133434 |
| Solanum tuberosum | ST4.03ch04 | 6 | CH_stu_66 | 6 | 9 | 1.87029e-17 |
| Theobroma cacao | Chromosome_9 | 6 | CH_tca_202 | 4 | 12 | 0.000000000583267 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 6 | CH_tpr_683 | 2 | 2 | 0.000454184 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 6 | CH_tpr_684 | 2 | 2 | 0.000454184 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |