Functional clusters
Information
- Type InterPro
- Description Casparian strip membrane protein domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Avicennia marina | ScioBoG_12795_HRSCAF_12848 | 5 | CH_ama_142 | 3 | 3 | 0.000147694 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 5 | CH_arhy_1134 | 4 | 15 | 0.000425414 |
| Amborella trichopoda | AmTr_v1.0_scaffold00016 | 5 | CH_atr_89 | 5 | 5 | 0.0000000000158737 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 5 | CH_bvu_445 | 3 | 5 | 0.000300279 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_99 | 8 | 55 | 0.0000000000353556 |
| Corylus avellana | 1 | 5 | CH_cav_219 | 4 | 4 | 0.0000000553317 |
| Corylus avellana | 10 | 5 | CH_cav_452 | 3 | 3 | 0.0000481091 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3298 | 5 | CH_cqu_608 | 3 | 3 | 0.0000284097 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1001 | 5 | CH_cqu_704 | 3 | 4 | 0.000113566 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_173 | 4 | 4 | 0.0000000809381 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_472 | 3 | 3 | 0.000127065 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 5 | CH_eca_275 | 4 | 5 | 0.000000167144 |
| Erythranthe guttata | scaffold_6 | 5 | CH_egut_677 | 3 | 4 | 0.000450892 |
| Fragaria vesca | Fvb7 | 5 | CH_fve_148 | 5 | 5 | 0.0000000000393806 |
| Glycine max | Gm18 | 5 | CH_gma_923 | 3 | 4 | 0.000736671 |
| Petunia axillaris | Peaxi162Scf00760 | 5 | CH_pax_512 | 4 | 13 | 0.000199746 |
| Prunus persica | Pp02 | 5 | CH_ppe_213 | 5 | 5 | 0.000000000152847 |
| Papaver somniferum | NC_039362.1 | 5 | CH_pso_168 | 6 | 7 | 0.00000000000019974 |
| Papaver somniferum | NW_020620492.1 | 5 | CH_pso_502 | 4 | 5 | 0.00000021993 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_522 | 5 | 17 | 0.0000000439122 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_373 | 4 | 4 | 0.00000003739 |
| Salvia bowleyana | GWHASIU00000006 | 5 | CH_sbo_520 | 3 | 3 | 0.0000727417 |
| Sechium edule | LG01 | 5 | CH_sed_425 | 3 | 4 | 0.000350211 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_1468 | 3 | 3 | 0.000011662 |
| Solanum lycopersicum | SL4.0ch04 | 5 | CH_sly_500 | 4 | 9 | 0.0000147946 |
| Solanum pennellii | Spenn-ch04 | 5 | CH_spe_390 | 4 | 8 | 0.00000250139 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 5 | CH_tpr_458 | 3 | 3 | 0.0000613716 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_639 | 3 | 4 | 0.000245247 |
| Zea mays | 4 | 5 | CH_zma_349 | 3 | 3 | 0.0000635906 |
| Avicennia marina | ScioBoG_12795_HRSCAF_12848 | 6 | CH_ama_142 | 3 | 3 | 0.000147694 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 6 | CH_arhy_1134 | 4 | 15 | 0.000425414 |
| Amborella trichopoda | AmTr_v1.0_scaffold00016 | 6 | CH_atr_89 | 5 | 5 | 0.0000000000158737 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 6 | CH_bvu_445 | 3 | 5 | 0.000300279 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_99 | 8 | 55 | 0.0000000000353556 |
| Corylus avellana | 1 | 6 | CH_cav_219 | 4 | 4 | 0.0000000553317 |
| Corylus avellana | 10 | 6 | CH_cav_452 | 3 | 3 | 0.0000481091 |
| Cucumis melo | chr09 | 6 | CH_cme_231 | 4 | 8 | 0.00000410307 |
| Cucumis melo | chr06 | 6 | CH_cme_282 | 3 | 3 | 0.0000518709 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3298 | 6 | CH_cqu_608 | 3 | 3 | 0.0000284097 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1001 | 6 | CH_cqu_704 | 3 | 4 | 0.000113566 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_173 | 4 | 4 | 0.0000000809381 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_472 | 3 | 3 | 0.000127065 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 6 | CH_eca_275 | 4 | 5 | 0.000000167144 |
| Erythranthe guttata | scaffold_6 | 6 | CH_egut_677 | 3 | 4 | 0.000450892 |
| Fragaria x ananassa | Fvb7-4 | 6 | CH_fan_347 | 4 | 4 | 0.000000140909 |
| Fragaria x ananassa | Fvb7-2 | 6 | CH_fan_856 | 3 | 3 | 0.000133598 |
| Fragaria x ananassa | Fvb7-2 | 6 | CH_fan_857 | 3 | 3 | 0.000133598 |
| Fragaria vesca | Fvb7 | 6 | CH_fve_148 | 5 | 5 | 0.0000000000393806 |
| Glycine max | Gm18 | 6 | CH_gma_923 | 3 | 4 | 0.000736671 |
| Petunia axillaris | Peaxi162Scf00760 | 6 | CH_pax_512 | 4 | 13 | 0.000199746 |
| Prunus persica | Pp02 | 6 | CH_ppe_213 | 5 | 5 | 0.000000000152847 |
| Papaver somniferum | NC_039362.1 | 6 | CH_pso_168 | 6 | 7 | 0.00000000000019974 |
| Papaver somniferum | NW_020620492.1 | 6 | CH_pso_502 | 4 | 5 | 0.00000021993 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_522 | 5 | 17 | 0.0000000439122 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_373 | 4 | 4 | 0.00000003739 |
| Salvia bowleyana | GWHASIU00000006 | 6 | CH_sbo_520 | 3 | 3 | 0.0000727417 |
| Sechium edule | LG01 | 6 | CH_sed_425 | 3 | 4 | 0.000350211 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_1468 | 3 | 3 | 0.000011662 |
| Solanum lycopersicum | SL4.0ch04 | 6 | CH_sly_500 | 4 | 9 | 0.0000147946 |
| Solanum pennellii | Spenn-ch04 | 6 | CH_spe_390 | 4 | 8 | 0.00000250139 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 6 | CH_tpr_458 | 3 | 3 | 0.0000613716 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_639 | 3 | 4 | 0.000245247 |
| Zea mays | 4 | 6 | CH_zma_349 | 3 | 3 | 0.0000635906 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |