Functional clusters

Information

  • Type InterPro
  • Description Small GTPase superfamily, SAR1-type

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_368 5 CH_aag_185 2 2 0.0000802568
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 5 CH_arhy_1290 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 5 CH_arhy_1291 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 5 CH_arhy_1292 2 2 0.000838273
Cannabis sativa NC_044376.1 5 CH_cansat_515 2 2 0.000393985
Corylus avellana 1 5 CH_cav_712 2 2 0.000460017
Carpinus fangiana Cfa06 5 CH_cfa_539 2 2 0.000454408
Eucalyptus grandis Chr01 5 CH_egr_3 20 21 3.72657e-60
Fragaria vesca Fvb4 5 CH_fve_303 3 3 0.0000000520576
Malus domestica Chr16 5 CH_mdo_1295 2 2 0.000568817
Punica granatum NC_045127.1 5 CH_pgr_586 2 4 0.000675279
Prunus persica Pp01 5 CH_ppe_746 2 2 0.000447577
Populus trichocarpa Chr13 5 CH_ptr_784 2 2 0.000867002
Populus trichocarpa Chr05 5 CH_ptr_785 2 2 0.000867002
Phaseolus vulgaris Chr03 5 CH_pvu_586 2 2 0.000440836
Quercus lobata 3 5 CH_qlo_57 10 13 5.29147e-30
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_338 5 13 0.0000000000731103
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_408 5 22 0.00000000149345
Selenicereus undatus Scaffold_33679 5 CH_sun_375 2 2 0.000726639
Theobroma cacao Chromosome_4 5 CH_tca_676 2 2 0.000439432
Anthoceros agrestis Sc2ySwM_368 6 CH_aag_185 2 2 0.0000802568
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 6 CH_arhy_1290 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 6 CH_arhy_1291 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 6 CH_arhy_1292 2 2 0.000838273
Cannabis sativa NC_044376.1 6 CH_cansat_515 2 2 0.000393985
Corylus avellana 1 6 CH_cav_712 2 2 0.000460017
Carpinus fangiana Cfa06 6 CH_cfa_539 2 2 0.000454408
Eucalyptus grandis Chr01 6 CH_egr_3 20 21 3.72657e-60
Fragaria vesca Fvb4 6 CH_fve_303 3 3 0.0000000520576
Malus domestica Chr16 6 CH_mdo_1295 2 2 0.000568817
Punica granatum NC_045127.1 6 CH_pgr_586 2 4 0.000675279
Prunus persica Pp01 6 CH_ppe_746 2 2 0.000447577
Populus trichocarpa Chr13 6 CH_ptr_784 2 2 0.000867002
Populus trichocarpa Chr05 6 CH_ptr_785 2 2 0.000867002
Phaseolus vulgaris Chr03 6 CH_pvu_586 2 2 0.000440836
Quercus lobata 3 6 CH_qlo_57 10 13 5.29147e-30
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_338 5 13 0.0000000000731103
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_408 5 22 0.00000000149345
Selenicereus undatus Scaffold_33679 6 CH_sun_375 2 2 0.000726639
Theobroma cacao Chromosome_4 6 CH_tca_676 2 2 0.000439432

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001