Functional clusters
Information
- Type InterPro
- Description Kelch repeat type 1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-8 | 5 | CH_aar_416 | 4 | 18 | 0.000692372 |
| Arabidopsis lyrata | scaffold_4 | 5 | CH_aly_187 | 8 | 29 | 0.0000000227863 |
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_210 | 5 | 5 | 0.0000000637951 |
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_375 | 4 | 4 | 0.0000140063 |
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_96 | 12 | 69 | 0.000000000014816 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_114 | 6 | 11 | 0.000000000183752 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_503 | 3 | 3 | 0.000258467 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_92 | 7 | 16 | 0.0000000000146743 |
| Amborella trichopoda | AmTr_v1.0_scaffold00013 | 5 | CH_atr_263 | 5 | 21 | 0.00000101822 |
| Brassica carinata | ChrC01 | 5 | CH_bca_978 | 4 | 4 | 0.00000579737 |
| Brassica napus | A01 | 5 | CH_bna_413 | 5 | 6 | 0.0000000619459 |
| Brassica napus | A04 | 5 | CH_bna_414 | 5 | 5 | 0.0000000619459 |
| Brassica oleracea | C1 | 5 | CH_bol_250 | 5 | 6 | 0.0000000976288 |
| Brassica oleracea | C4 | 5 | CH_bol_406 | 4 | 13 | 0.00000539507 |
| Brassica oleracea | C6 | 5 | CH_bol_511 | 5 | 14 | 0.0000319241 |
| Brassica rapa | A01 | 5 | CH_bra_291 | 4 | 4 | 0.0000109719 |
| Camellia sinensis var. sinensis | Chr9 | 5 | CH_camsi_996 | 3 | 3 | 0.0000874305 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_383 | 6 | 24 | 0.00000648516 |
| Corchorus olitorius | AWUE01016274.1 | 5 | CH_col_101 | 3 | 3 | 0.0000211202 |
| Capsella rubella | scaffold_8 | 5 | CH_cru_166 | 6 | 7 | 0.00000000214689 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_284 | 7 | 25 | 0.00000063408 |
| Eutrema salsugineum | scaffold_3 | 5 | CH_esa_106 | 7 | 11 | 0.000000000247752 |
| Eutrema salsugineum | scaffold_15 | 5 | CH_esa_378 | 6 | 33 | 0.000180837 |
| Gossypium hirsutum | D06 | 5 | CH_ghi_755 | 6 | 51 | 0.0000267012 |
| Gossypium hirsutum | A06 | 5 | CH_ghi_836 | 4 | 9 | 0.0000738806 |
| Glycine max | Gm07 | 5 | CH_gma_683 | 3 | 3 | 0.0001644 |
| Helianthus annuus | HanXRQChr04 | 5 | CH_han_396 | 5 | 8 | 0.0000000288044 |
| Helianthus annuus | HanXRQChr04 | 5 | CH_han_77 | 8 | 8 | 1.76771e-18 |
| Magnolia biondii | Chr02 | 5 | CH_mbi_259 | 5 | 8 | 0.00000000134263 |
| Nicotiana tabacum | Nitab4.5_0000343 | 5 | CH_nta_176 | 3 | 3 | 0.0000415406 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_271 | 4 | 6 | 0.000000582867 |
| Quercus lobata | 11 | 5 | CH_qlo_651 | 6 | 17 | 0.00000000831665 |
| Sechium edule | LG09 | 5 | CH_sed_169 | 4 | 4 | 0.000000211983 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_1185 | 4 | 4 | 0.000000399097 |
| Aethionema arabicum | LG-8 | 6 | CH_aar_416 | 4 | 18 | 0.000692372 |
| Arabidopsis lyrata | scaffold_4 | 6 | CH_aly_187 | 8 | 29 | 0.0000000227863 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_210 | 5 | 5 | 0.0000000637951 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_375 | 4 | 4 | 0.0000140063 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_96 | 12 | 69 | 0.000000000014816 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_114 | 6 | 11 | 0.000000000183752 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_503 | 3 | 3 | 0.000258467 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_92 | 7 | 16 | 0.0000000000146743 |
| Amborella trichopoda | AmTr_v1.0_scaffold00013 | 6 | CH_atr_263 | 5 | 21 | 0.00000101822 |
| Brassica carinata | ChrC01 | 6 | CH_bca_978 | 4 | 4 | 0.00000579737 |
| Brassica napus | A01 | 6 | CH_bna_413 | 5 | 6 | 0.0000000619459 |
| Brassica napus | A04 | 6 | CH_bna_414 | 5 | 5 | 0.0000000619459 |
| Brassica oleracea | C1 | 6 | CH_bol_250 | 5 | 6 | 0.0000000976288 |
| Brassica oleracea | C4 | 6 | CH_bol_406 | 4 | 13 | 0.00000539507 |
| Brassica oleracea | C6 | 6 | CH_bol_511 | 5 | 14 | 0.0000319241 |
| Brassica rapa | A01 | 6 | CH_bra_291 | 4 | 4 | 0.0000109719 |
| Camellia sinensis var. sinensis | Chr9 | 6 | CH_camsi_996 | 3 | 3 | 0.0000874305 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_383 | 6 | 24 | 0.00000648516 |
| Corchorus olitorius | AWUE01016274.1 | 6 | CH_col_101 | 3 | 3 | 0.0000211202 |
| Capsella rubella | scaffold_8 | 6 | CH_cru_166 | 6 | 7 | 0.00000000214689 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_284 | 7 | 25 | 0.00000063408 |
| Eutrema salsugineum | scaffold_3 | 6 | CH_esa_106 | 7 | 11 | 0.000000000247752 |
| Eutrema salsugineum | scaffold_15 | 6 | CH_esa_378 | 6 | 33 | 0.000180837 |
| Gossypium hirsutum | D06 | 6 | CH_ghi_755 | 6 | 51 | 0.0000267012 |
| Gossypium hirsutum | A06 | 6 | CH_ghi_836 | 4 | 9 | 0.0000738806 |
| Glycine max | Gm07 | 6 | CH_gma_683 | 3 | 3 | 0.0001644 |
| Helianthus annuus | HanXRQChr04 | 6 | CH_han_396 | 5 | 8 | 0.0000000288044 |
| Helianthus annuus | HanXRQChr04 | 6 | CH_han_77 | 8 | 8 | 1.76771e-18 |
| Magnolia biondii | Chr02 | 6 | CH_mbi_259 | 5 | 8 | 0.00000000134263 |
| Nicotiana tabacum | Nitab4.5_0000343 | 6 | CH_nta_176 | 3 | 3 | 0.0000415406 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_271 | 4 | 6 | 0.000000582867 |
| Quercus lobata | 11 | 6 | CH_qlo_651 | 6 | 17 | 0.00000000831665 |
| Sechium edule | LG09 | 6 | CH_sed_169 | 4 | 4 | 0.000000211983 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_1185 | 4 | 4 | 0.000000399097 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |