Functional clusters
Information
- Type InterPro
- Description UAS
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_677 | 2 | 2 | 0.000660044 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_584 | 2 | 3 | 0.000515668 |
| Brassica carinata | ChrB02 | 5 | CH_bca_650 | 3 | 3 | 0.000000383844 |
| Brassica carinata | ChrC02 | 5 | CH_bca_806 | 3 | 4 | 0.0000015352 |
| Brassica napus | C04 | 5 | CH_bna_550 | 3 | 4 | 0.000000591181 |
| Brassica oleracea | C4 | 5 | CH_bol_337 | 3 | 6 | 0.0000011216 |
| Brassica rapa | A04 | 5 | CH_bra_568 | 2 | 2 | 0.00064397 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_261 | 3 | 3 | 0.000000143334 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_592 | 2 | 2 | 0.000438693 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_759 | 2 | 2 | 0.000448722 |
| Eutrema salsugineum | scaffold_1 | 5 | CH_esa_282 | 4 | 56 | 0.0000169172 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_178 | 5 | 7 | 0.000000000000347592 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_780 | 3 | 7 | 0.0000217327 |
| Quercus lobata | 3 | 5 | CH_qlo_1776 | 2 | 2 | 0.000774433 |
| Schrenkiella parvula | ch7-4 | 5 | CH_spa_101 | 4 | 17 | 0.0000000522094 |
| Trochodendron aralioides | group12 | 5 | CH_tar_922 | 3 | 28 | 0.00061808 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_677 | 2 | 2 | 0.000660044 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_584 | 2 | 3 | 0.000515668 |
| Brassica carinata | ChrB02 | 6 | CH_bca_650 | 3 | 3 | 0.000000383844 |
| Brassica carinata | ChrC02 | 6 | CH_bca_806 | 3 | 4 | 0.0000015352 |
| Brassica napus | C04 | 6 | CH_bna_550 | 3 | 4 | 0.000000591181 |
| Brassica oleracea | C4 | 6 | CH_bol_337 | 3 | 6 | 0.0000011216 |
| Brassica rapa | A04 | 6 | CH_bra_568 | 2 | 2 | 0.00064397 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_261 | 3 | 3 | 0.000000143334 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_592 | 2 | 2 | 0.000438693 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_759 | 2 | 2 | 0.000448722 |
| Eutrema salsugineum | scaffold_1 | 6 | CH_esa_282 | 4 | 56 | 0.0000169172 |
| Fragaria x ananassa | Fvb4-2 | 6 | CH_fan_422 | 3 | 3 | 0.000000790914 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_178 | 5 | 7 | 0.000000000000347592 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_780 | 3 | 7 | 0.0000217327 |
| Quercus lobata | 3 | 6 | CH_qlo_1776 | 2 | 2 | 0.000774433 |
| Schrenkiella parvula | ch7-4 | 6 | CH_spa_101 | 4 | 17 | 0.0000000522094 |
| Trochodendron aralioides | group12 | 6 | CH_tar_922 | 3 | 28 | 0.00061808 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |