Functional clusters

Information

  • Type InterPro
  • Description Leucine-rich repeat, cysteine-containing subtype

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-2 5 CH_aar_85 6 9 0.0000000000968847
Acer truncatum chr10 5 CH_acertr_113 6 10 0.0000000000368445
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 5 CH_arhy_156 8 9 1.52527e-16
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 5 CH_arhy_157 9 15 1.62389e-16
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 5 CH_arhy_282 7 13 0.0000000000148155
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 5 CH_arhy_340 7 18 0.000000000272408
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 5 CH_arhy_920 4 8 0.0000786345
Brassica carinata Contig281 5 CH_bca_1928 3 4 0.000624345
Brassica napus C07 5 CH_bna_671 4 6 0.00000260807
Camellia sinensis var. sinensis Chr15 5 CH_camsi_669 5 25 0.00000167084
Camellia sinensis var. sinensis Chr5 5 CH_camsi_900 3 3 0.0000389242
Capsicum annuum PGAv.1.6.scaffold623 5 CH_can_115 8 20 0.000000000000181816
Capsicum annuum PGAv.1.6.scaffold943 5 CH_can_93 8 12 7.22291e-16
Corylus avellana 2 5 CH_cav_70 8 19 0.0000000000000530815
Chara braunii BFEA01000279 5 CH_cbr_282 3 5 0.000226685
Carpinus fangiana Cfa01 5 CH_cfa_106 6 8 0.00000000000601358
Chenopodium quinoa C_Quinoa_Scaffold_3514 5 CH_cqu_288 5 8 0.0000000389486
Chenopodium quinoa C_Quinoa_Scaffold_3333 5 CH_cqu_519 4 6 0.0000061249
Eucalyptus grandis Chr02 5 CH_egr_1337 3 4 0.000538587
Eucalyptus grandis Chr05 5 CH_egr_544 5 6 0.00000000183489
Eucalyptus grandis Chr02 5 CH_egr_625 5 8 0.0000000170829
Fragaria vesca Fvb5 5 CH_fve_118 7 10 0.00000000000293317
Fragaria vesca Fvb2 5 CH_fve_95 8 13 0.0000000000000765854
Helianthus annuus HanXRQChr12 5 CH_han_497 4 4 0.000000367636
Helianthus annuus HanXRQChr04 5 CH_han_569 4 5 0.00000183581
Helianthus annuus HanXRQChr08 5 CH_han_968 3 3 0.000229236
Lotus japonicus chr3 5 CH_lja_441 3 3 0.000159734
Malus domestica Chr05 5 CH_mdo_749 4 8 0.0000138587
Medicago truncatula chr2 5 CH_mtr_1450 3 3 0.000905913
Medicago truncatula chr6 5 CH_mtr_211 10 35 0.000000000000109361
Medicago truncatula chr4 5 CH_mtr_234 10 40 0.000000000000499278
Medicago truncatula chr4 5 CH_mtr_357 7 16 0.000000000448828
Oryza sativa ssp. japonica chr12 5 CH_osa_510 3 3 0.0000554104
Pisum sativum chr3LG5 5 CH_psa_154 7 31 0.00000000483027
Pisum sativum chr4LG4 5 CH_psa_586 3 3 0.000223429
Pisum sativum chr7LG7 5 CH_psa_73 7 11 0.000000000000624203
Papaver somniferum NC_039362.1 5 CH_pso_1159 4 19 0.000494092
Papaver somniferum NC_039358.1 5 CH_pso_714 4 8 0.0000090088
Papaver somniferum NW_020650970.1 5 CH_pso_738 5 28 0.0000133067
Quercus lobata 5 5 CH_qlo_282 7 8 0.00000000000000276507
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_1369 4 16 0.000566998
Rhododendron simsii chr08 5 CH_rsi_43 13 18 5.85864e-26
Rhododendron simsii chr01 5 CH_rsi_5 30 37 1.9893e-68
Salvia bowleyana GWHASIU00000003 5 CH_sbo_725 4 25 0.000573742
Sequoiadendron giganteum chr10 5 CH_sgi_2204 3 3 0.000270818
Schrenkiella parvula ch7-5 5 CH_spa_308 3 4 0.000313446
Trochodendron aralioides group3 5 CH_tar_551 4 10 0.0000615514
Trifolium pratense Tp57577_TGAC_v2_scaf_204 5 CH_tpr_120 7 17 0.000000000815705
Trifolium pratense Tp57577_TGAC_v2_scaf_247 5 CH_tpr_184 5 6 0.0000000332283
Trifolium pratense Tp57577_TGAC_v2_LG4 5 CH_tpr_273 5 10 0.0000013824
Trifolium pratense Tp57577_TGAC_v2_scaf_577 5 CH_tpr_430 4 6 0.0000291952
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_521 3 3 0.000100644
Aethionema arabicum LG-2 6 CH_aar_85 6 9 0.0000000000968847
Acer truncatum chr10 6 CH_acertr_113 6 10 0.0000000000368445
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 6 CH_arhy_156 8 9 1.52527e-16
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 6 CH_arhy_157 9 15 1.62389e-16
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 6 CH_arhy_282 7 13 0.0000000000148155
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 6 CH_arhy_340 7 18 0.000000000272408
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 6 CH_arhy_920 4 8 0.0000786345
Brassica carinata Contig281 6 CH_bca_1928 3 4 0.000624345
Brassica napus C07 6 CH_bna_671 4 6 0.00000260807
Camellia sinensis var. sinensis Chr15 6 CH_camsi_669 5 25 0.00000167084
Camellia sinensis var. sinensis Chr5 6 CH_camsi_900 3 3 0.0000389242
Capsicum annuum PGAv.1.6.scaffold623 6 CH_can_115 8 20 0.000000000000181816
Capsicum annuum PGAv.1.6.scaffold943 6 CH_can_93 8 12 7.22291e-16
Corylus avellana 2 6 CH_cav_70 8 19 0.0000000000000530815
Chara braunii BFEA01000279 6 CH_cbr_282 3 5 0.000226685
Carpinus fangiana Cfa01 6 CH_cfa_106 6 8 0.00000000000601358
Chenopodium quinoa C_Quinoa_Scaffold_3514 6 CH_cqu_288 5 8 0.0000000389486
Chenopodium quinoa C_Quinoa_Scaffold_3333 6 CH_cqu_519 4 6 0.0000061249
Eucalyptus grandis Chr02 6 CH_egr_1337 3 4 0.000538587
Eucalyptus grandis Chr05 6 CH_egr_544 5 6 0.00000000183489
Eucalyptus grandis Chr02 6 CH_egr_625 5 8 0.0000000170829
Fragaria x ananassa Fvb6-3 6 CH_fan_1120 4 10 0.000568962
Fragaria vesca Fvb5 6 CH_fve_118 7 10 0.00000000000293317
Fragaria vesca Fvb2 6 CH_fve_95 8 13 0.0000000000000765854
Helianthus annuus HanXRQChr12 6 CH_han_497 4 4 0.000000367636
Helianthus annuus HanXRQChr04 6 CH_han_569 4 5 0.00000183581
Helianthus annuus HanXRQChr08 6 CH_han_968 3 3 0.000229236
Lotus japonicus chr3 6 CH_lja_441 3 3 0.000159734
Malus domestica Chr05 6 CH_mdo_749 4 8 0.0000138587
Medicago truncatula chr2 6 CH_mtr_1450 3 3 0.000905913
Medicago truncatula chr6 6 CH_mtr_211 10 35 0.000000000000109361
Medicago truncatula chr4 6 CH_mtr_234 10 40 0.000000000000499278
Medicago truncatula chr4 6 CH_mtr_357 7 16 0.000000000448828
Oryza sativa ssp. japonica chr12 6 CH_osa_510 3 3 0.0000554104
Pisum sativum chr3LG5 6 CH_psa_154 7 31 0.00000000483027
Pisum sativum chr4LG4 6 CH_psa_586 3 3 0.000223429
Pisum sativum chr7LG7 6 CH_psa_73 7 11 0.000000000000624203
Papaver somniferum NC_039362.1 6 CH_pso_1159 4 19 0.000494092
Papaver somniferum NC_039358.1 6 CH_pso_714 4 8 0.0000090088
Papaver somniferum NW_020650970.1 6 CH_pso_738 5 28 0.0000133067
Quercus lobata 5 6 CH_qlo_282 7 8 0.00000000000000276507
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_1369 4 16 0.000566998
Rhododendron simsii chr08 6 CH_rsi_43 13 18 5.85864e-26
Rhododendron simsii chr01 6 CH_rsi_5 30 37 1.9893e-68
Salvia bowleyana GWHASIU00000003 6 CH_sbo_725 4 25 0.000573742
Sequoiadendron giganteum chr10 6 CH_sgi_2204 3 3 0.000270818
Schrenkiella parvula ch7-5 6 CH_spa_308 3 4 0.000313446
Trochodendron aralioides group3 6 CH_tar_551 4 10 0.0000615514
Trifolium pratense Tp57577_TGAC_v2_scaf_204 6 CH_tpr_120 7 17 0.000000000815705
Trifolium pratense Tp57577_TGAC_v2_scaf_247 6 CH_tpr_184 5 6 0.0000000332283
Trifolium pratense Tp57577_TGAC_v2_LG4 6 CH_tpr_273 5 10 0.0000013824
Trifolium pratense Tp57577_TGAC_v2_scaf_577 6 CH_tpr_430 4 6 0.0000291952
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_521 3 3 0.000100644

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001