Functional clusters
Information
- Type InterPro
- Description Cystatin-related, plant
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-1 | 5 | CH_aar_111 | 6 | 27 | 0.00000000418838 |
| Aethionema arabicum | LG-11 | 5 | CH_aar_8 | 14 | 36 | 9.95618e-31 |
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_144 | 5 | 6 | 0.000000000725929 |
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_247 | 6 | 36 | 0.000000279148 |
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_306 | 4 | 6 | 0.00000144551 |
| Arabidopsis lyrata | scaffold_2 | 5 | CH_aly_41 | 8 | 11 | 3.34008e-17 |
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_561 | 3 | 4 | 0.000299792 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 5 | CH_arhy_1017 | 2 | 2 | 0.00017963 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_146 | 4 | 5 | 0.00000000170866 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_536 | 3 | 13 | 0.000400625 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_98 | 5 | 11 | 0.0000000000361518 |
| Brassica carinata | ChrB01 | 5 | CH_bca_1 | 13 | 14 | 6.11586e-37 |
| Brassica carinata | ChrB01 | 5 | CH_bca_112 | 6 | 8 | 0.000000000000113718 |
| Brassica carinata | ChrC03 | 5 | CH_bca_1124 | 3 | 3 | 0.0000211498 |
| Brassica carinata | ChrC01 | 5 | CH_bca_1372 | 3 | 4 | 0.0000845609 |
| Brassica carinata | ChrB05 | 5 | CH_bca_580 | 4 | 6 | 0.000000186322 |
| Brassica napus | C03 | 5 | CH_bna_560 | 4 | 10 | 0.000000717226 |
| Brassica napus | A10 | 5 | CH_bna_788 | 3 | 3 | 0.00000838003 |
| Brassica napus | A03 | 5 | CH_bna_89 | 6 | 7 | 0.00000000000000372533 |
| Brassica oleracea | C2 | 5 | CH_bol_412 | 3 | 4 | 0.00000621037 |
| Brassica oleracea | C3 | 5 | CH_bol_702 | 3 | 12 | 0.000255797 |
| Brassica rapa | A02 | 5 | CH_bra_273 | 3 | 3 | 0.00000808678 |
| Brassica rapa | A10 | 5 | CH_bra_274 | 3 | 3 | 0.00000808678 |
| Camellia sinensis var. sinensis | Chr12 | 5 | CH_camsi_8 | 15 | 25 | 2.57394e-42 |
| Cardamine hirsuta | Chr2 | 5 | CH_chi_366 | 3 | 3 | 0.00000401335 |
| Cardamine hirsuta | Chr3 | 5 | CH_chi_541 | 3 | 6 | 0.0000801776 |
| Carya illinoinensis | Chr10 | 5 | CH_cil_241 | 5 | 25 | 0.00000000147765 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_114 | 5 | 5 | 0.0000000000210697 |
| Capsella rubella | scaffold_2 | 5 | CH_cru_34 | 8 | 9 | 9.84346e-20 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_477 | 3 | 4 | 0.000105006 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_76 | 6 | 6 | 0.0000000000000177186 |
| Eutrema salsugineum | scaffold_8 | 5 | CH_esa_266 | 3 | 4 | 0.0000099479 |
| Punica granatum | NC_045133.1 | 5 | CH_pgr_194 | 3 | 3 | 0.0000000337834 |
| Quercus lobata | 10 | 5 | CH_qlo_326 | 5 | 12 | 0.0000000000000422033 |
| Rhododendron simsii | chr01 | 5 | CH_rsi_830 | 3 | 5 | 0.000227946 |
| Tarenaya hassleriana | NW_010969548.1 | 5 | CH_tha_28 | 6 | 26 | 0.000000000000240752 |
| Tripterygium wilfordii | NC_052237.1 | 5 | CH_twi_401 | 2 | 2 | 0.000167252 |
| Aethionema arabicum | LG-1 | 6 | CH_aar_111 | 6 | 27 | 0.00000000418838 |
| Aethionema arabicum | LG-11 | 6 | CH_aar_8 | 14 | 36 | 9.95618e-31 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_144 | 5 | 6 | 0.000000000725929 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_247 | 6 | 36 | 0.000000279148 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_306 | 4 | 6 | 0.00000144551 |
| Arabidopsis lyrata | scaffold_2 | 6 | CH_aly_41 | 8 | 11 | 3.34008e-17 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_561 | 3 | 4 | 0.000299792 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 6 | CH_arhy_1017 | 2 | 2 | 0.00017963 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_146 | 4 | 5 | 0.00000000170866 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_536 | 3 | 13 | 0.000400625 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_98 | 5 | 11 | 0.0000000000361518 |
| Brassica carinata | ChrB01 | 6 | CH_bca_1 | 13 | 14 | 6.11586e-37 |
| Brassica carinata | ChrB01 | 6 | CH_bca_112 | 6 | 8 | 0.000000000000113718 |
| Brassica carinata | ChrC03 | 6 | CH_bca_1124 | 3 | 3 | 0.0000211498 |
| Brassica carinata | ChrC01 | 6 | CH_bca_1372 | 3 | 4 | 0.0000845609 |
| Brassica carinata | ChrB05 | 6 | CH_bca_580 | 4 | 6 | 0.000000186322 |
| Brassica napus | C03 | 6 | CH_bna_560 | 4 | 10 | 0.000000717226 |
| Brassica napus | A10 | 6 | CH_bna_788 | 3 | 3 | 0.00000838003 |
| Brassica napus | A03 | 6 | CH_bna_89 | 6 | 7 | 0.00000000000000372533 |
| Brassica oleracea | C2 | 6 | CH_bol_412 | 3 | 4 | 0.00000621037 |
| Brassica oleracea | C3 | 6 | CH_bol_702 | 3 | 12 | 0.000255797 |
| Brassica rapa | A02 | 6 | CH_bra_273 | 3 | 3 | 0.00000808678 |
| Brassica rapa | A10 | 6 | CH_bra_274 | 3 | 3 | 0.00000808678 |
| Camellia sinensis var. sinensis | Chr12 | 6 | CH_camsi_8 | 15 | 25 | 2.57394e-42 |
| Cardamine hirsuta | Chr2 | 6 | CH_chi_366 | 3 | 3 | 0.00000401335 |
| Cardamine hirsuta | Chr3 | 6 | CH_chi_541 | 3 | 6 | 0.0000801776 |
| Carya illinoinensis | Chr10 | 6 | CH_cil_241 | 5 | 25 | 0.00000000147765 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_114 | 5 | 5 | 0.0000000000210697 |
| Capsella rubella | scaffold_2 | 6 | CH_cru_34 | 8 | 9 | 9.84346e-20 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_477 | 3 | 4 | 0.000105006 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_76 | 6 | 6 | 0.0000000000000177186 |
| Eutrema salsugineum | scaffold_8 | 6 | CH_esa_266 | 3 | 4 | 0.0000099479 |
| Punica granatum | NC_045133.1 | 6 | CH_pgr_194 | 3 | 3 | 0.0000000337834 |
| Quercus lobata | 10 | 6 | CH_qlo_326 | 5 | 12 | 0.0000000000000422033 |
| Rhododendron simsii | chr01 | 6 | CH_rsi_830 | 3 | 5 | 0.000227946 |
| Tarenaya hassleriana | NW_010969548.1 | 6 | CH_tha_28 | 6 | 26 | 0.000000000000240752 |
| Tripterygium wilfordii | NC_052237.1 | 6 | CH_twi_401 | 2 | 2 | 0.000167252 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |