Functional clusters
Information
- Type InterPro
- Description Protein of unknown function PDDEXK-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 5 | CH_arhy_692 | 3 | 3 | 0.00000349564 |
| Brassica carinata | ChrC01 | 5 | CH_bca_411 | 4 | 5 | 0.0000000133866 |
| Brassica carinata | ChrC08 | 5 | CH_bca_70 | 6 | 6 | 3.85525e-16 |
| Brassica napus | A07 | 5 | CH_bna_702 | 3 | 3 | 0.00000369001 |
| Brassica napus | C06 | 5 | CH_bna_840 | 3 | 4 | 0.0000147565 |
| Brassica oleracea | C6 | 5 | CH_bol_402 | 3 | 4 | 0.00000522985 |
| Brassica rapa | A07 | 5 | CH_bra_238 | 3 | 3 | 0.000002256 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_109 | 6 | 8 | 0.00000000000000237032 |
| Coffea canephora | chr5 | 5 | CH_ccan_319 | 3 | 24 | 0.0000137758 |
| Chlamydomonas reinhardtii | chromosome_16 | 5 | CH_cre_32 | 7 | 49 | 0.0000000466952 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_808 | 3 | 3 | 0.000000847827 |
| Helianthus annuus | HanXRQChr16 | 5 | CH_han_568 | 3 | 3 | 0.0000018278 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_425 | 3 | 3 | 0.00000113346 |
| Medicago truncatula | chr4 | 5 | CH_mtr_965 | 3 | 6 | 0.0000490344 |
| Rhododendron simsii | chr06 | 5 | CH_rsi_585 | 3 | 5 | 0.0000178552 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_146 | 8 | 8 | 1.55095e-23 |
| Theobroma cacao | Chromosome_10 | 5 | CH_tca_460 | 3 | 5 | 0.0000176915 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 5 | CH_tpr_312 | 3 | 3 | 0.00000312875 |
| Vanilla planifolia | CM028159.1 | 5 | CH_vpl_617 | 2 | 2 | 0.000443328 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 6 | CH_arhy_692 | 3 | 3 | 0.00000349564 |
| Brassica carinata | ChrC01 | 6 | CH_bca_411 | 4 | 5 | 0.0000000133866 |
| Brassica carinata | ChrC08 | 6 | CH_bca_70 | 6 | 6 | 3.85525e-16 |
| Brassica napus | A07 | 6 | CH_bna_702 | 3 | 3 | 0.00000369001 |
| Brassica napus | C06 | 6 | CH_bna_840 | 3 | 4 | 0.0000147565 |
| Brassica oleracea | C6 | 6 | CH_bol_402 | 3 | 4 | 0.00000522985 |
| Brassica rapa | A07 | 6 | CH_bra_238 | 3 | 3 | 0.000002256 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_109 | 6 | 8 | 0.00000000000000237032 |
| Coffea canephora | chr5 | 6 | CH_ccan_319 | 3 | 24 | 0.0000137758 |
| Chlamydomonas reinhardtii | chromosome_16 | 6 | CH_cre_32 | 7 | 49 | 0.0000000466952 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_808 | 3 | 3 | 0.000000847827 |
| Helianthus annuus | HanXRQChr16 | 6 | CH_han_568 | 3 | 3 | 0.0000018278 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_425 | 3 | 3 | 0.00000113346 |
| Medicago truncatula | chr4 | 6 | CH_mtr_965 | 3 | 6 | 0.0000490344 |
| Rhododendron simsii | chr06 | 6 | CH_rsi_585 | 3 | 5 | 0.0000178552 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_146 | 8 | 8 | 1.55095e-23 |
| Theobroma cacao | Chromosome_10 | 6 | CH_tca_460 | 3 | 5 | 0.0000176915 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 6 | CH_tpr_312 | 3 | 3 | 0.00000312875 |
| Vanilla planifolia | CM028159.1 | 6 | CH_vpl_617 | 2 | 2 | 0.000443328 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |