Functional clusters

Information

  • Type InterPro
  • Description Squalene synthase-like

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-2 5 CH_aar_121 3 3 0.0000000124856
Arabidopsis lyrata scaffold_7 5 CH_aly_510 2 2 0.000198013
Arabidopsis thaliana Chr4 5 CH_ath_356 2 2 0.0000286492
Brassica carinata Contig324 5 CH_bca_1643 2 2 0.000320646
Brassica rapa A01 5 CH_bra_512 2 2 0.000429314
Brassica rapa A03 5 CH_bra_513 2 2 0.000429314
Beta vulgaris Chr9_EL10_PGA_scaffold8 5 CH_bvu_333 2 2 0.0000827917
Camellia sinensis var. sinensis Chr3 5 CH_camsi_1165 2 4 0.000275116
Chenopodium quinoa C_Quinoa_Scaffold_3670 5 CH_cqu_725 2 2 0.000142146
Capsella rubella scaffold_7 5 CH_cru_435 2 2 0.0000731154
Eutrema salsugineum scaffold_1 5 CH_esa_317 2 2 0.0000761499
Punica granatum NC_045128.1 5 CH_pgr_91 5 17 0.0000000000014709
Salix brachista GWHAAZH00000009 5 CH_sbr_217 3 3 0.0000000238253
Schrenkiella parvula ch7-5 5 CH_spa_223 2 2 0.000078734
Aethionema arabicum LG-2 6 CH_aar_121 3 3 0.0000000124856
Arabidopsis lyrata scaffold_7 6 CH_aly_510 2 2 0.000198013
Arabidopsis thaliana Chr4 6 CH_ath_356 2 2 0.0000286492
Brassica carinata Contig324 6 CH_bca_1643 2 2 0.000320646
Brassica rapa A01 6 CH_bra_512 2 2 0.000429314
Brassica rapa A03 6 CH_bra_513 2 2 0.000429314
Beta vulgaris Chr9_EL10_PGA_scaffold8 6 CH_bvu_333 2 2 0.0000827917
Camellia sinensis var. sinensis Chr3 6 CH_camsi_1165 2 4 0.000275116
Chenopodium quinoa C_Quinoa_Scaffold_3670 6 CH_cqu_725 2 2 0.000142146
Capsella rubella scaffold_7 6 CH_cru_435 2 2 0.0000731154
Eutrema salsugineum scaffold_1 6 CH_esa_317 2 2 0.0000761499
Punica granatum NC_045128.1 6 CH_pgr_91 5 17 0.0000000000014709
Salix brachista GWHAAZH00000009 6 CH_sbr_217 3 3 0.0000000238253
Schrenkiella parvula ch7-5 6 CH_spa_223 2 2 0.000078734

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001