Functional clusters
Information
- Type InterPro
- Description P-type ATPase, subfamily IIB
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 5 | CH_bvu_239 | 3 | 3 | 0.00000123386 |
Camellia sinensis var. sinensis | Chr5 | 5 | CH_camsi_29 | 11 | 28 | 1.18342e-24 |
Citrus clementina | scaffold_5 | 5 | CH_ccl_447 | 3 | 4 | 0.0000183637 |
Carpinus fangiana | Cfa03 | 5 | CH_cfa_130 | 5 | 8 | 0.0000000000602985 |
Carya illinoinensis | Chr02 | 5 | CH_cil_170 | 5 | 5 | 0.00000000000728319 |
Carya illinoinensis | Chr07 | 5 | CH_cil_273 | 4 | 4 | 0.0000000106811 |
Carya illinoinensis | Chr01 | 5 | CH_cil_549 | 3 | 4 | 0.0000599011 |
Daucus carota | DCARv2_Chr8 | 5 | CH_dca_453 | 3 | 6 | 0.0000828899 |
Davidia involucrata | GWHABJS00000002 | 5 | CH_din_95 | 6 | 10 | 0.000000000000339842 |
Durio zibethinus | NW_019168004.1 | 5 | CH_dzi_150 | 4 | 5 | 0.00000000723425 |
Eucalyptus grandis | Chr08 | 5 | CH_egr_62 | 12 | 13 | 7.01009e-32 |
Eucalyptus grandis | Chr08 | 5 | CH_egr_70 | 12 | 15 | 2.45034e-30 |
Lonicera japonica | GWHAAZE00000003 | 5 | CH_lonja_256 | 5 | 8 | 0.0000000000334034 |
Nelumbo nucifera | chr6 | 5 | CH_nnu_78 | 5 | 8 | 0.00000000000987016 |
Punica granatum | NC_045128.1 | 5 | CH_pgr_359 | 3 | 5 | 0.0000139283 |
Prunus persica | Pp01 | 5 | CH_ppe_248 | 4 | 4 | 0.00000000170002 |
Prunus persica | Pp07 | 5 | CH_ppe_445 | 3 | 3 | 0.00000379798 |
Quercus lobata | 11 | 5 | CH_qlo_481 | 5 | 6 | 0.0000000000314116 |
Sequoiadendron giganteum | chr5 | 5 | CH_sgi_2003 | 2 | 2 | 0.000146145 |
Selaginella moellendorffii | scaffold_1 | 5 | CH_smo_371 | 2 | 2 | 0.000933707 |
Trochodendron aralioides | group17 | 5 | CH_tar_115 | 6 | 15 | 0.0000000000518666 |
Trochodendron aralioides | group2 | 5 | CH_tar_28 | 9 | 17 | 8.28857e-20 |
Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 6 | CH_bvu_239 | 3 | 3 | 0.00000123386 |
Camellia sinensis var. sinensis | Chr5 | 6 | CH_camsi_29 | 11 | 28 | 1.18342e-24 |
Citrus clementina | scaffold_5 | 6 | CH_ccl_447 | 3 | 4 | 0.0000183637 |
Carpinus fangiana | Cfa03 | 6 | CH_cfa_130 | 5 | 8 | 0.0000000000602985 |
Carya illinoinensis | Chr02 | 6 | CH_cil_170 | 5 | 5 | 0.00000000000728319 |
Carya illinoinensis | Chr07 | 6 | CH_cil_273 | 4 | 4 | 0.0000000106811 |
Carya illinoinensis | Chr01 | 6 | CH_cil_549 | 3 | 4 | 0.0000599011 |
Daucus carota | DCARv2_Chr8 | 6 | CH_dca_453 | 3 | 6 | 0.0000828899 |
Davidia involucrata | GWHABJS00000002 | 6 | CH_din_95 | 6 | 10 | 0.000000000000339842 |
Durio zibethinus | NW_019168004.1 | 6 | CH_dzi_150 | 4 | 5 | 0.00000000723425 |
Eucalyptus grandis | Chr08 | 6 | CH_egr_62 | 12 | 13 | 7.01009e-32 |
Eucalyptus grandis | Chr08 | 6 | CH_egr_70 | 12 | 15 | 2.45034e-30 |
Fragaria x ananassa | Fvb4-2 | 6 | CH_fan_169 | 5 | 10 | 0.000000000188206 |
Fragaria x ananassa | Fvb4-3 | 6 | CH_fan_589 | 4 | 18 | 0.00000648342 |
Lonicera japonica | GWHAAZE00000003 | 6 | CH_lonja_256 | 5 | 8 | 0.0000000000334034 |
Nelumbo nucifera | chr6 | 6 | CH_nnu_78 | 5 | 8 | 0.00000000000987016 |
Punica granatum | NC_045128.1 | 6 | CH_pgr_359 | 3 | 5 | 0.0000139283 |
Prunus persica | Pp01 | 6 | CH_ppe_248 | 4 | 4 | 0.00000000170002 |
Prunus persica | Pp07 | 6 | CH_ppe_445 | 3 | 3 | 0.00000379798 |
Quercus lobata | 11 | 6 | CH_qlo_481 | 5 | 6 | 0.0000000000314116 |
Sequoiadendron giganteum | chr5 | 6 | CH_sgi_2003 | 2 | 2 | 0.000146145 |
Selaginella moellendorffii | scaffold_1 | 6 | CH_smo_371 | 2 | 2 | 0.000933707 |
Trochodendron aralioides | group17 | 6 | CH_tar_115 | 6 | 15 | 0.0000000000518666 |
Trochodendron aralioides | group2 | 6 | CH_tar_28 | 9 | 17 | 8.28857e-20 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |