Functional clusters
Information
- Type InterPro
- Description Elongation factor 4
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00078 | 5 | CH_atr_202 | 3 | 3 | 0.0000000946662 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 5 | CH_bvu_422 | 2 | 2 | 0.000248375 |
| Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_477 | 3 | 3 | 0.0000000630811 |
| Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_478 | 3 | 3 | 0.0000000630811 |
| Coffea canephora | chr7 | 5 | CH_ccan_659 | 2 | 37 | 0.000574936 |
| Citrullus lanatus | CG_Chr04 | 5 | CH_cla_118 | 3 | 5 | 0.000000472131 |
| Carica papaya | supercontig_37 | 5 | CH_cpa_566 | 2 | 3 | 0.000570396 |
| Carica papaya | supercontig_14 | 5 | CH_cpa_567 | 2 | 2 | 0.000570396 |
| Glycine max | Gm04 | 5 | CH_gma_871 | 2 | 2 | 0.000569336 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_485 | 3 | 6 | 0.000000430325 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_539 | 2 | 2 | 0.00015649 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_1048 | 3 | 3 | 0.0000000711967 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_1049 | 3 | 3 | 0.0000000711967 |
| Trochodendron aralioides | group11 | 5 | CH_tar_655 | 2 | 2 | 0.00018011 |
| Amborella trichopoda | AmTr_v1.0_scaffold00078 | 6 | CH_atr_202 | 3 | 3 | 0.0000000946662 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 6 | CH_bvu_422 | 2 | 2 | 0.000248375 |
| Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_477 | 3 | 3 | 0.0000000630811 |
| Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_478 | 3 | 3 | 0.0000000630811 |
| Coffea canephora | chr7 | 6 | CH_ccan_659 | 2 | 37 | 0.000574936 |
| Citrullus lanatus | CG_Chr04 | 6 | CH_cla_118 | 3 | 5 | 0.000000472131 |
| Carica papaya | supercontig_37 | 6 | CH_cpa_566 | 2 | 3 | 0.000570396 |
| Carica papaya | supercontig_14 | 6 | CH_cpa_567 | 2 | 2 | 0.000570396 |
| Fragaria x ananassa | Fvb1-3 | 6 | CH_fan_958 | 2 | 2 | 0.000277554 |
| Glycine max | Gm04 | 6 | CH_gma_871 | 2 | 2 | 0.000569336 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_485 | 3 | 6 | 0.000000430325 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_539 | 2 | 2 | 0.00015649 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_1048 | 3 | 3 | 0.0000000711967 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_1049 | 3 | 3 | 0.0000000711967 |
| Trochodendron aralioides | group11 | 6 | CH_tar_655 | 2 | 2 | 0.00018011 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |