Functional clusters
Information
- Type InterPro
- Description Cation-transporting P-type ATPase, C-terminal
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group3 | 5 | CH_ach_70 | 5 | 11 | 0.00000000510822 |
| Avicennia marina | ScioBoG_102837_HRSCAF_103074 | 5 | CH_ama_99 | 3 | 4 | 0.0000363802 |
| Capsicum annuum | PGAv.1.6.scaffold1084 | 5 | CH_can_638 | 3 | 5 | 0.000206914 |
| Corylus avellana | 2 | 5 | CH_cav_397 | 3 | 3 | 0.0000117275 |
| Carya illinoinensis | Chr09 | 5 | CH_cil_337 | 4 | 5 | 0.000000146068 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3820 | 5 | CH_cqu_369 | 4 | 7 | 0.000000305647 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 5 | CH_cqu_567 | 3 | 3 | 0.0000136728 |
| Davidia involucrata | GWHABJS00000016 | 5 | CH_din_606 | 3 | 4 | 0.000159866 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 5 | CH_eca_285 | 4 | 9 | 0.000000204083 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_697 | 4 | 4 | 0.000000089621 |
| Malus domestica | Chr15 | 5 | CH_mdo_527 | 4 | 7 | 0.000000421994 |
| Olea europaea | chr7 | 5 | CH_oeu_295 | 3 | 3 | 0.0000422278 |
| Olea europaea | chr20 | 5 | CH_oeu_491 | 3 | 4 | 0.000168782 |
| Populus trichocarpa | Chr16 | 5 | CH_ptr_484 | 3 | 3 | 0.0000164174 |
| Quercus lobata | 5 | 5 | CH_qlo_283 | 9 | 33 | 0.00000000000000297872 |
| Sechium edule | LG05 | 5 | CH_sed_242 | 3 | 3 | 0.00000427548 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_1225 | 3 | 3 | 0.000000587373 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_166 | 4 | 4 | 0.000000000628338 |
| Trochodendron aralioides | group0 | 5 | CH_tar_558 | 5 | 47 | 0.0000629272 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_230 | 4 | 4 | 0.00000000360671 |
| Vitis vinifera | chr5 | 5 | CH_vvi_173 | 5 | 8 | 0.000000000369664 |
| Vitis vinifera | chr14 | 5 | CH_vvi_477 | 3 | 4 | 0.0000534298 |
| Actinidia chinensis | Lachesis_group3 | 6 | CH_ach_70 | 5 | 11 | 0.00000000510822 |
| Avicennia marina | ScioBoG_102837_HRSCAF_103074 | 6 | CH_ama_99 | 3 | 4 | 0.0000363802 |
| Capsicum annuum | PGAv.1.6.scaffold1084 | 6 | CH_can_638 | 3 | 5 | 0.000206914 |
| Corylus avellana | 2 | 6 | CH_cav_397 | 3 | 3 | 0.0000117275 |
| Carya illinoinensis | Chr09 | 6 | CH_cil_337 | 4 | 5 | 0.000000146068 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3820 | 6 | CH_cqu_369 | 4 | 7 | 0.000000305647 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 6 | CH_cqu_567 | 3 | 3 | 0.0000136728 |
| Davidia involucrata | GWHABJS00000016 | 6 | CH_din_606 | 3 | 4 | 0.000159866 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 6 | CH_eca_285 | 4 | 9 | 0.000000204083 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_697 | 4 | 4 | 0.000000089621 |
| Malus domestica | Chr15 | 6 | CH_mdo_527 | 4 | 7 | 0.000000421994 |
| Olea europaea | chr7 | 6 | CH_oeu_295 | 3 | 3 | 0.0000422278 |
| Olea europaea | chr20 | 6 | CH_oeu_491 | 3 | 4 | 0.000168782 |
| Populus trichocarpa | Chr16 | 6 | CH_ptr_484 | 3 | 3 | 0.0000164174 |
| Quercus lobata | 5 | 6 | CH_qlo_283 | 9 | 33 | 0.00000000000000297872 |
| Sechium edule | LG05 | 6 | CH_sed_242 | 3 | 3 | 0.00000427548 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_1225 | 3 | 3 | 0.000000587373 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_166 | 4 | 4 | 0.000000000628338 |
| Trochodendron aralioides | group0 | 6 | CH_tar_558 | 5 | 47 | 0.0000629272 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_230 | 4 | 4 | 0.00000000360671 |
| Vitis vinifera | chr5 | 6 | CH_vvi_173 | 5 | 8 | 0.000000000369664 |
| Vitis vinifera | chr14 | 6 | CH_vvi_477 | 3 | 4 | 0.0000534298 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |