Functional clusters

Information

  • Type InterPro
  • Description Cupin 1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 5 CH_aag_256 5 14 0.000215509
Anthoceros agrestis Sc2ySwM_362 5 CH_aag_30 9 13 0.000000000000057381
Anthoceros agrestis Sc2ySwM_344 5 CH_aag_41 12 52 0.00000000000180248
Anthoceros agrestis Sc2ySwM_117 5 CH_aag_57 6 6 0.000000000588991
Acer truncatum chr2 5 CH_acertr_3 17 34 1.49756e-34
Acer truncatum chr3 5 CH_acertr_97 6 7 0.00000000000628896
Actinidia chinensis Lachesis_group15 5 CH_ach_421 3 4 0.000268523
Actinidia chinensis Lachesis_group11 5 CH_ach_65 5 7 0.00000000187655
Arabidopsis lyrata scaffold_3 5 CH_aly_209 5 11 0.0000000629094
Aquilegia oxysepala CHR02 5 CH_aox_382 3 4 0.000191245
Arabidopsis thaliana Chr5 5 CH_ath_23 12 73 6.86442e-22
Amborella trichopoda AmTr_v1.0_scaffold00121 5 CH_atr_74 6 7 0.00000000000162454
Camellia sinensis var. sinensis Chr1 5 CH_camsi_34 11 14 5.25264e-24
Camellia sinensis var. sinensis Chr9 5 CH_camsi_689 4 5 0.0000021701
Capsicum annuum PGAv.1.6.scaffold1001 5 CH_can_169 6 9 0.000000000166156
Capsicum annuum PGAv.1.6.scaffold1161 5 CH_can_305 6 22 0.000000144349
Capsicum annuum PGAv.1.6.scaffold410 5 CH_can_399 4 5 0.0000024725
Corylus avellana 2 5 CH_cav_20 16 32 1.32854e-29
Corylus avellana 1 5 CH_cav_7 19 31 2.49648e-38
Citrus clementina scaffold_3 5 CH_ccl_30 12 15 8.49337e-26
Ceratophyllum demersum 6 5 CH_cde_110 5 16 0.00000063209
Ceratophyllum demersum 4 5 CH_cde_38 8 68 0.00000000204581
Cardamine hirsuta Chr8 5 CH_chi_39 12 39 1.6975e-21
Citrullus lanatus CG_Chr05 5 CH_cla_245 3 3 0.000125842
Carica papaya supercontig_166 5 CH_cpa_147 4 4 0.000000151849
Chenopodium quinoa C_Quinoa_Scaffold_1522 5 CH_cqu_159 6 6 0.0000000000624781
Chenopodium quinoa C_Quinoa_Scaffold_4329 5 CH_cqu_2 30 37 2.04748e-64
Daucus carota DCARv2_Chr5 5 CH_dca_184 4 5 0.0000000413305
Davidia involucrata GWHABJS00000007 5 CH_din_205 5 6 0.0000000138215
Davidia involucrata GWHABJS00000007 5 CH_din_5 16 25 1.24272e-32
Davidia involucrata GWHABJS00000005 5 CH_din_718 3 3 0.000471172
Erigeron canadensis Conyza_canadensis_scaffold:6 5 CH_eca_655 4 17 0.000172662
Eucalyptus grandis Chr05 5 CH_egr_671 5 6 0.0000000484479
Eucalyptus grandis Chr03 5 CH_egr_726 8 54 0.000000176883
Fragaria vesca Fvb3 5 CH_fve_523 4 9 0.0000374338
Gossypium hirsutum A11 5 CH_ghi_15 18 20 2.1107e-44
Gossypium raimondii Chr13 5 CH_gra_70 9 16 5.40187e-17
Gossypium raimondii Chr07 5 CH_gra_8 17 20 1.29401e-40
Helianthus annuus HanXRQChr13 5 CH_han_79 9 14 2.26391e-18
Hydrangea macrophylla Hma1.2p1_0057F.1 5 CH_hma_2 18 19 5.74279e-44
Lupinus albus Lalb_Chr06 5 CH_lal_100 5 5 0.000000000133684
Lonicera japonica GWHAAZE00000134 5 CH_lonja_118 10 14 1.64327e-18
Lonicera japonica GWHAAZE00000009 5 CH_lonja_363 5 5 0.00000000844684
Lonicera japonica GWHAAZE00000002 5 CH_lonja_39 20 49 7.46238e-34
Lonicera japonica GWHAAZE00000002 5 CH_lonja_43 16 21 1.3214e-32
Lactuca sativa Lsat_1_v8_lg_9 5 CH_lsa_641 3 3 0.000103973
Magnolia biondii Chr06 5 CH_mbi_256 6 12 0.00000000121745
Magnolia biondii Chr19 5 CH_mbi_624 4 6 0.00000659515
Malus domestica Chr08 5 CH_mdo_1447 3 5 0.000855098
Malus domestica Chr05 5 CH_mdo_212 7 24 0.0000000000441372
Malus domestica Chr10 5 CH_mdo_424 5 11 0.000000050087
Manihot esculenta Chromosome05 5 CH_mes_356 4 4 0.00000125532
Manihot esculenta Chromosome11 5 CH_mes_654 3 3 0.000513911
Marchantia polymorpha scaffold_31 5 CH_mpo_7 12 23 1.60736e-18
Medicago truncatula chr2 5 CH_mtr_176 8 12 0.00000000000000372344
Medicago truncatula chr2 5 CH_mtr_358 6 10 0.000000000477849
Medicago truncatula chr7 5 CH_mtr_437 5 6 0.00000000741923
Medicago truncatula chr3 5 CH_mtr_488 5 7 0.0000000259268
Nelumbo nucifera chr1 5 CH_nnu_23 9 14 1.29742e-19
Nelumbo nucifera chr6 5 CH_nnu_618 3 5 0.000813801
Nelumbo nucifera chr7 5 CH_nnu_84 6 10 0.0000000000280229
Olea europaea chr21 5 CH_oeu_44 6 9 0.00000000000190042
Olea europaea chr10 5 CH_oeu_45 6 9 0.00000000000190042
Petunia axillaris Peaxi162Scf00476 5 CH_pax_258 4 4 0.000000753062
Petunia axillaris Peaxi162Scf00194 5 CH_pax_33 8 10 6.92646e-16
Petunia axillaris Peaxi162Scf00003 5 CH_pax_668 4 13 0.000529875
Pisum sativum chr6LG2 5 CH_psa_288 4 6 0.00000124058
Papaver somniferum NC_039359.1 5 CH_pso_182 8 21 0.000000000000464148
Populus trichocarpa Chr13 5 CH_ptr_116 7 8 0.000000000000106238
Phaseolus vulgaris Chr07 5 CH_pvu_101 6 7 0.00000000000176755
Phaseolus vulgaris Chr02 5 CH_pvu_483 3 3 0.000092961
Quercus lobata 1 5 CH_qlo_322 7 7 0.0000000000000316956
Quercus lobata 5 5 CH_qlo_445 7 11 0.0000000000103671
Quercus lobata CM012294 5 CH_qlo_451 6 6 0.0000000000125272
Quercus lobata 11 5 CH_qlo_720 5 6 0.0000000293444
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_1019 4 11 0.0000477342
Rhododendron simsii chr01 5 CH_rsi_152 7 8 0.0000000000000316338
Salvia bowleyana GWHASIU00000002 5 CH_sbo_13 19 44 7.71981e-39
Salvia bowleyana GWHASIU00000002 5 CH_sbo_597 3 3 0.000142093
Sechium edule LG05 5 CH_sed_165 4 4 0.000000162321
Sequoiadendron giganteum chr3 5 CH_sgi_130 17 65 6.82262e-25
Sequoiadendron giganteum chr4 5 CH_sgi_2614 3 3 0.000856012
Sequoiadendron giganteum chr8 5 CH_sgi_759 6 10 0.00000000342668
Sequoiadendron giganteum chr3 5 CH_sgi_80 13 13 1.17875e-29
Solanum lycopersicum SL4.0ch06 5 CH_sly_139 6 7 0.00000000000223156
Solanum pennellii Spenn-ch09 5 CH_spe_403 4 7 0.00000338422
Solanum pennellii Spenn-ch06 5 CH_spe_99 6 8 0.0000000000035549
Solanum tuberosum ST4.03ch06 5 CH_stu_249 5 6 0.00000000348336
Solanum tuberosum ST4.03ch01 5 CH_stu_45 10 12 1.67432e-21
Trochodendron aralioides group18 5 CH_tar_22 10 13 1.46936e-20
Trochodendron aralioides group3 5 CH_tar_92 7 12 0.00000000000521133
Theobroma cacao Chromosome_9 5 CH_tca_573 3 3 0.000148242
Theobroma cacao Chromosome_4 5 CH_tca_715 3 4 0.000592197
Trifolium pratense Tp57577_TGAC_v2_LG2 5 CH_tpr_266 4 5 0.00000106046
Trifolium pratense Tp57577_TGAC_v2_LG3 5 CH_tpr_537 3 3 0.000130479
Trifolium pratense Tp57577_TGAC_v2_scaf_74 5 CH_tpr_538 3 3 0.000130479
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_120 5 5 0.000000000607469
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_53 7 7 0.00000000000000194423
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_533 3 3 0.000171548
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_534 3 3 0.000171548
Vitis vinifera chr14 5 CH_vvi_16 18 40 1.09421e-34
Anthoceros agrestis Sc2ySwM_228 6 CH_aag_256 5 14 0.000215509
Anthoceros agrestis Sc2ySwM_362 6 CH_aag_30 9 13 0.000000000000057381
Anthoceros agrestis Sc2ySwM_344 6 CH_aag_41 12 52 0.00000000000180248
Anthoceros agrestis Sc2ySwM_117 6 CH_aag_57 6 6 0.000000000588991
Acer truncatum chr2 6 CH_acertr_3 17 34 1.49756e-34
Acer truncatum chr3 6 CH_acertr_97 6 7 0.00000000000628896
Actinidia chinensis Lachesis_group15 6 CH_ach_421 3 4 0.000268523
Actinidia chinensis Lachesis_group11 6 CH_ach_65 5 7 0.00000000187655
Arabidopsis lyrata scaffold_3 6 CH_aly_209 5 11 0.0000000629094
Aquilegia oxysepala CHR02 6 CH_aox_382 3 4 0.000191245
Arabidopsis thaliana Chr5 6 CH_ath_23 12 73 6.86442e-22
Amborella trichopoda AmTr_v1.0_scaffold00121 6 CH_atr_74 6 7 0.00000000000162454
Camellia sinensis var. sinensis Chr1 6 CH_camsi_34 11 14 5.25264e-24
Camellia sinensis var. sinensis Chr9 6 CH_camsi_689 4 5 0.0000021701
Capsicum annuum PGAv.1.6.scaffold1001 6 CH_can_169 6 9 0.000000000166156
Capsicum annuum PGAv.1.6.scaffold1161 6 CH_can_305 6 22 0.000000144349
Capsicum annuum PGAv.1.6.scaffold410 6 CH_can_399 4 5 0.0000024725
Corylus avellana 2 6 CH_cav_20 16 32 1.32854e-29
Corylus avellana 1 6 CH_cav_7 19 31 2.49648e-38
Citrus clementina scaffold_3 6 CH_ccl_30 12 15 8.49337e-26
Ceratophyllum demersum 6 6 CH_cde_110 5 16 0.00000063209
Ceratophyllum demersum 4 6 CH_cde_38 8 68 0.00000000204581
Cardamine hirsuta Chr8 6 CH_chi_39 12 39 1.6975e-21
Citrullus lanatus CG_Chr05 6 CH_cla_245 3 3 0.000125842
Carica papaya supercontig_166 6 CH_cpa_147 4 4 0.000000151849
Chenopodium quinoa C_Quinoa_Scaffold_1522 6 CH_cqu_159 6 6 0.0000000000624781
Chenopodium quinoa C_Quinoa_Scaffold_4329 6 CH_cqu_2 30 37 2.04748e-64
Daucus carota DCARv2_Chr5 6 CH_dca_184 4 5 0.0000000413305
Davidia involucrata GWHABJS00000007 6 CH_din_205 5 6 0.0000000138215
Davidia involucrata GWHABJS00000007 6 CH_din_5 16 25 1.24272e-32
Davidia involucrata GWHABJS00000005 6 CH_din_718 3 3 0.000471172
Erigeron canadensis Conyza_canadensis_scaffold:6 6 CH_eca_655 4 17 0.000172662
Eucalyptus grandis Chr05 6 CH_egr_671 5 6 0.0000000484479
Eucalyptus grandis Chr03 6 CH_egr_726 8 54 0.000000176883
Fragaria x ananassa Fvb3-4 6 CH_fan_443 5 12 0.000000970651
Fragaria vesca Fvb3 6 CH_fve_523 4 9 0.0000374338
Gossypium hirsutum A11 6 CH_ghi_15 18 20 2.1107e-44
Gossypium raimondii Chr13 6 CH_gra_70 9 16 5.40187e-17
Gossypium raimondii Chr07 6 CH_gra_8 17 20 1.29401e-40
Helianthus annuus HanXRQChr13 6 CH_han_79 9 14 2.26391e-18
Hydrangea macrophylla Hma1.2p1_0057F.1 6 CH_hma_2 18 19 5.74279e-44
Lupinus albus Lalb_Chr06 6 CH_lal_100 5 5 0.000000000133684
Lonicera japonica GWHAAZE00000134 6 CH_lonja_118 10 14 1.64327e-18
Lonicera japonica GWHAAZE00000009 6 CH_lonja_363 5 5 0.00000000844684
Lonicera japonica GWHAAZE00000002 6 CH_lonja_39 20 49 7.46238e-34
Lonicera japonica GWHAAZE00000002 6 CH_lonja_43 16 21 1.3214e-32
Lactuca sativa Lsat_1_v8_lg_9 6 CH_lsa_641 3 3 0.000103973
Magnolia biondii Chr06 6 CH_mbi_256 6 12 0.00000000121745
Magnolia biondii Chr19 6 CH_mbi_624 4 6 0.00000659515
Malus domestica Chr08 6 CH_mdo_1447 3 5 0.000855098
Malus domestica Chr05 6 CH_mdo_212 7 24 0.0000000000441372
Malus domestica Chr10 6 CH_mdo_424 5 11 0.000000050087
Manihot esculenta Chromosome05 6 CH_mes_356 4 4 0.00000125532
Manihot esculenta Chromosome11 6 CH_mes_654 3 3 0.000513911
Marchantia polymorpha scaffold_31 6 CH_mpo_7 12 23 1.60736e-18
Medicago truncatula chr2 6 CH_mtr_176 8 12 0.00000000000000372344
Medicago truncatula chr2 6 CH_mtr_358 6 10 0.000000000477849
Medicago truncatula chr7 6 CH_mtr_437 5 6 0.00000000741923
Medicago truncatula chr3 6 CH_mtr_488 5 7 0.0000000259268
Nelumbo nucifera chr1 6 CH_nnu_23 9 14 1.29742e-19
Nelumbo nucifera chr6 6 CH_nnu_618 3 5 0.000813801
Nelumbo nucifera chr7 6 CH_nnu_84 6 10 0.0000000000280229
Olea europaea chr21 6 CH_oeu_44 6 9 0.00000000000190042
Olea europaea chr10 6 CH_oeu_45 6 9 0.00000000000190042
Petunia axillaris Peaxi162Scf00476 6 CH_pax_258 4 4 0.000000753062
Petunia axillaris Peaxi162Scf00194 6 CH_pax_33 8 10 6.92646e-16
Petunia axillaris Peaxi162Scf00003 6 CH_pax_668 4 13 0.000529875
Pisum sativum chr6LG2 6 CH_psa_288 4 6 0.00000124058
Papaver somniferum NC_039359.1 6 CH_pso_182 8 21 0.000000000000464148
Populus trichocarpa Chr13 6 CH_ptr_116 7 8 0.000000000000106238
Phaseolus vulgaris Chr07 6 CH_pvu_101 6 7 0.00000000000176755
Phaseolus vulgaris Chr02 6 CH_pvu_483 3 3 0.000092961
Quercus lobata 1 6 CH_qlo_322 7 7 0.0000000000000316956
Quercus lobata 5 6 CH_qlo_445 7 11 0.0000000000103671
Quercus lobata CM012294 6 CH_qlo_451 6 6 0.0000000000125272
Quercus lobata 11 6 CH_qlo_720 5 6 0.0000000293444
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_1019 4 11 0.0000477342
Rhododendron simsii chr01 6 CH_rsi_152 7 8 0.0000000000000316338
Salvia bowleyana GWHASIU00000002 6 CH_sbo_13 19 44 7.71981e-39
Salvia bowleyana GWHASIU00000002 6 CH_sbo_597 3 3 0.000142093
Sechium edule LG05 6 CH_sed_165 4 4 0.000000162321
Sequoiadendron giganteum chr3 6 CH_sgi_130 17 65 6.82262e-25
Sequoiadendron giganteum chr4 6 CH_sgi_2614 3 3 0.000856012
Sequoiadendron giganteum chr8 6 CH_sgi_759 6 10 0.00000000342668
Sequoiadendron giganteum chr3 6 CH_sgi_80 13 13 1.17875e-29
Solanum lycopersicum SL4.0ch06 6 CH_sly_139 6 7 0.00000000000223156
Solanum pennellii Spenn-ch09 6 CH_spe_403 4 7 0.00000338422
Solanum pennellii Spenn-ch06 6 CH_spe_99 6 8 0.0000000000035549
Solanum tuberosum ST4.03ch06 6 CH_stu_249 5 6 0.00000000348336
Solanum tuberosum ST4.03ch01 6 CH_stu_45 10 12 1.67432e-21
Trochodendron aralioides group18 6 CH_tar_22 10 13 1.46936e-20
Trochodendron aralioides group3 6 CH_tar_92 7 12 0.00000000000521133
Theobroma cacao Chromosome_9 6 CH_tca_573 3 3 0.000148242
Theobroma cacao Chromosome_4 6 CH_tca_715 3 4 0.000592197
Trifolium pratense Tp57577_TGAC_v2_LG2 6 CH_tpr_266 4 5 0.00000106046
Trifolium pratense Tp57577_TGAC_v2_LG3 6 CH_tpr_537 3 3 0.000130479
Trifolium pratense Tp57577_TGAC_v2_scaf_74 6 CH_tpr_538 3 3 0.000130479
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_120 5 5 0.000000000607469
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_53 7 7 0.00000000000000194423
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_533 3 3 0.000171548
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_534 3 3 0.000171548
Vitis vinifera chr14 6 CH_vvi_16 18 40 1.09421e-34

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001