Functional clusters

Information

  • Type InterPro
  • Description 11-S seed storage protein, plant

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_117 5 CH_aag_237 4 17 0.000131133
Anthoceros agrestis Sc2ySwM_344 5 CH_aag_369 4 26 0.000816777
Actinidia chinensis Lachesis_group9 5 CH_ach_183 3 5 0.0000024781
Arabidopsis lyrata scaffold_1 5 CH_aly_725 2 2 0.000990066
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 5 CH_arhy_183 6 10 0.00000000000000847298
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 5 CH_arhy_254 7 59 0.0000000000032999
Arabidopsis thaliana Chr1 5 CH_ath_553 2 2 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00067 5 CH_atr_257 3 6 0.000000757172
Cannabis sativa NC_044373.1 5 CH_cansat_109 4 4 0.000000000107034
Cicer arietinum L. Ca_LG3_v3 5 CH_car_95 3 3 0.000000508852
Corylus avellana 8 5 CH_cav_333 3 5 0.00000308523
Chara braunii BFEA01000591 5 CH_cbr_125 3 3 0.00000434588
Chara braunii BFEA01000149 5 CH_cbr_141 3 4 0.0000173768
Chara braunii BFEA01000546 5 CH_cbr_9 8 22 1.28683e-17
Citrus clementina scaffold_9 5 CH_ccl_772 2 2 0.000820311
Carpinus fangiana Cfa01 5 CH_cfa_85 5 6 0.0000000000000829124
Carya illinoinensis Chr03 5 CH_cil_238 4 5 0.00000000117861
Carya illinoinensis Chr01 5 CH_cil_454 3 4 0.00000380275
Carica papaya supercontig_165 5 CH_cpa_565 2 2 0.000570396
Cucumis sativus L. chr3 5 CH_csa_112 4 5 0.00000000109928
Davidia involucrata GWHABJS00000010 5 CH_din_328 3 4 0.00000180066
Erigeron canadensis Conyza_canadensis_scaffold:9 5 CH_eca_352 3 4 0.00000144956
Erythranthe guttata scaffold_12 5 CH_egut_128 5 5 0.00000000000130491
Erythranthe guttata scaffold_7 5 CH_egut_435 3 4 0.0000216238
Fragaria vesca Fvb2 5 CH_fve_52 6 6 7.3774e-18
Glycine max Gm03 5 CH_gma_386 3 3 0.000000786602
Lotus japonicus chr4 5 CH_lja_282 3 3 0.00000219371
Lotus japonicus chr1 5 CH_lja_319 3 4 0.00000877217
Lactuca sativa Lsat_1_v8_lg_5 5 CH_lsa_387 3 3 0.000000332904
Malus domestica Chr05 5 CH_mdo_1404 2 2 0.000796344
Medicago truncatula chr8 5 CH_mtr_675 3 3 0.000000921714
Medicago truncatula chr7 5 CH_mtr_766 3 4 0.00000368615
Medicago truncatula chr1 5 CH_mtr_767 3 4 0.00000368615
Nelumbo nucifera chr3 5 CH_nnu_368 3 5 0.0000462567
Nicotiana tabacum Nitab4.5_0000470 5 CH_nta_58 4 6 0.00000000748791
Oryza sativa ssp. japonica chr02 5 CH_osa_132 5 10 0.0000000000294067
Prunus persica Pp06 5 CH_ppe_836 2 2 0.000745962
Prunus persica Pp08 5 CH_ppe_837 2 2 0.000745962
Papaver somniferum NC_039358.1 5 CH_pso_386 4 6 0.0000000140958
Papaver somniferum NC_039363.1 5 CH_pso_935 3 7 0.000108087
Populus trichocarpa Chr19 5 CH_ptr_187 4 4 0.000000000191187
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_92 7 9 9.01327e-21
Rhododendron simsii chr01 5 CH_rsi_323 4 8 0.00000000710642
Salvia bowleyana GWHASIU00000006 5 CH_sbo_536 3 11 0.000112559
Salix brachista GWHAAZH00000016 5 CH_sbr_183 4 7 0.00000000330907
Simmondsia chinensis GWHAASQ00000007 5 CH_sci_518 2 2 0.000851426
Sechium edule LG01 5 CH_sed_222 3 3 0.00000218355
Sequoiadendron giganteum chr2 5 CH_sgi_1330 3 10 0.00000170821
Solanum lycopersicum SL4.0ch09 5 CH_sly_557 3 9 0.0000520325
Solanum tuberosum ST4.03ch09 5 CH_stu_475 3 5 0.00000649737
Trochodendron aralioides group1 5 CH_tar_329 3 4 0.000000756855
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_238 3 3 0.00000045335
Vitis vinifera chr7 5 CH_vvi_325 3 3 0.000000486007
Anthoceros agrestis Sc2ySwM_117 6 CH_aag_237 4 17 0.000131133
Anthoceros agrestis Sc2ySwM_344 6 CH_aag_369 4 26 0.000816777
Actinidia chinensis Lachesis_group9 6 CH_ach_183 3 5 0.0000024781
Arabidopsis lyrata scaffold_1 6 CH_aly_725 2 2 0.000990066
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 6 CH_arhy_183 6 10 0.00000000000000847298
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 6 CH_arhy_254 7 59 0.0000000000032999
Arabidopsis thaliana Chr1 6 CH_ath_553 2 2 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00067 6 CH_atr_257 3 6 0.000000757172
Cannabis sativa NC_044373.1 6 CH_cansat_109 4 4 0.000000000107034
Cicer arietinum L. Ca_LG3_v3 6 CH_car_95 3 3 0.000000508852
Corylus avellana 8 6 CH_cav_333 3 5 0.00000308523
Chara braunii BFEA01000591 6 CH_cbr_125 3 3 0.00000434588
Chara braunii BFEA01000149 6 CH_cbr_141 3 4 0.0000173768
Chara braunii BFEA01000546 6 CH_cbr_9 8 22 1.28683e-17
Citrus clementina scaffold_9 6 CH_ccl_772 2 2 0.000820311
Carpinus fangiana Cfa01 6 CH_cfa_85 5 6 0.0000000000000829124
Carya illinoinensis Chr03 6 CH_cil_238 4 5 0.00000000117861
Carya illinoinensis Chr01 6 CH_cil_454 3 4 0.00000380275
Cucumis melo chr04 6 CH_cme_84 4 4 0.0000000000311765
Carica papaya supercontig_165 6 CH_cpa_565 2 2 0.000570396
Cucumis sativus L. chr3 6 CH_csa_112 4 5 0.00000000109928
Davidia involucrata GWHABJS00000010 6 CH_din_328 3 4 0.00000180066
Erigeron canadensis Conyza_canadensis_scaffold:9 6 CH_eca_352 3 4 0.00000144956
Erythranthe guttata scaffold_12 6 CH_egut_128 5 5 0.00000000000130491
Erythranthe guttata scaffold_7 6 CH_egut_435 3 4 0.0000216238
Fragaria x ananassa Fvb2-2 6 CH_fan_119 5 7 0.00000000000313596
Fragaria x ananassa Fvb2-3 6 CH_fan_197 4 4 0.000000000598041
Fragaria x ananassa Fvb2-4 6 CH_fan_292 4 8 0.0000000418278
Fragaria x ananassa Fvb2-1 6 CH_fan_502 3 3 0.00000230854
Fragaria vesca Fvb2 6 CH_fve_52 6 6 7.3774e-18
Glycine max Gm03 6 CH_gma_386 3 3 0.000000786602
Lotus japonicus chr4 6 CH_lja_282 3 3 0.00000219371
Lotus japonicus chr1 6 CH_lja_319 3 4 0.00000877217
Lactuca sativa Lsat_1_v8_lg_5 6 CH_lsa_387 3 3 0.000000332904
Malus domestica Chr05 6 CH_mdo_1404 2 2 0.000796344
Medicago truncatula chr8 6 CH_mtr_675 3 3 0.000000921714
Medicago truncatula chr7 6 CH_mtr_766 3 4 0.00000368615
Medicago truncatula chr1 6 CH_mtr_767 3 4 0.00000368615
Nelumbo nucifera chr3 6 CH_nnu_368 3 5 0.0000462567
Nicotiana tabacum Nitab4.5_0000470 6 CH_nta_58 4 6 0.00000000748791
Oryza sativa ssp. japonica chr02 6 CH_osa_132 5 10 0.0000000000294067
Prunus persica Pp06 6 CH_ppe_836 2 2 0.000745962
Prunus persica Pp08 6 CH_ppe_837 2 2 0.000745962
Papaver somniferum NC_039358.1 6 CH_pso_386 4 6 0.0000000140958
Papaver somniferum NC_039363.1 6 CH_pso_935 3 7 0.000108087
Populus trichocarpa Chr19 6 CH_ptr_187 4 4 0.000000000191187
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_92 7 9 9.01327e-21
Rhododendron simsii chr01 6 CH_rsi_323 4 8 0.00000000710642
Salvia bowleyana GWHASIU00000006 6 CH_sbo_536 3 11 0.000112559
Salix brachista GWHAAZH00000016 6 CH_sbr_183 4 7 0.00000000330907
Simmondsia chinensis GWHAASQ00000007 6 CH_sci_518 2 2 0.000851426
Sechium edule LG01 6 CH_sed_222 3 3 0.00000218355
Sequoiadendron giganteum chr2 6 CH_sgi_1330 3 10 0.00000170821
Solanum lycopersicum SL4.0ch09 6 CH_sly_557 3 9 0.0000520325
Solanum tuberosum ST4.03ch09 6 CH_stu_475 3 5 0.00000649737
Trochodendron aralioides group1 6 CH_tar_329 3 4 0.000000756855
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_238 3 3 0.00000045335
Vitis vinifera chr7 6 CH_vvi_325 3 3 0.000000486007

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001