Functional clusters
Information
- Type InterPro
- Description UspA
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica oleracea | C5 | 5 | CH_bol_447 | 4 | 9 | 0.0000113629 |
| Camellia sinensis var. sinensis | Chr6 | 5 | CH_camsi_216 | 6 | 9 | 0.00000000000778072 |
| Cannabis sativa | NC_044370.1 | 5 | CH_cansat_161 | 6 | 26 | 0.00000000836926 |
| Capsicum annuum | PGAv.1.6.scaffold334 | 5 | CH_can_518 | 3 | 3 | 0.000055854 |
| Cucumis sativus L. | chr7 | 5 | CH_csa_219 | 4 | 6 | 0.000000939554 |
| Erythranthe guttata | scaffold_2 | 5 | CH_egut_202 | 5 | 7 | 0.00000000254426 |
| Magnolia biondii | Chr19 | 5 | CH_mbi_261 | 5 | 8 | 0.00000000153434 |
| Manihot esculenta | Chromosome14 | 5 | CH_mes_603 | 3 | 4 | 0.000256604 |
| Medicago truncatula | chr3 | 5 | CH_mtr_1004 | 3 | 4 | 0.0000786573 |
| Nelumbo nucifera | chr4 | 5 | CH_nnu_183 | 4 | 4 | 0.0000000547166 |
| Punica granatum | NC_045134.1 | 5 | CH_pgr_333 | 4 | 7 | 0.00000600026 |
| Salix brachista | GWHAAZH00000018 | 5 | CH_sbr_570 | 4 | 15 | 0.000252673 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1041 | 5 | 9 | 0.0000000689267 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_2610 | 3 | 4 | 0.000812818 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_536 | 7 | 14 | 0.00000000000475918 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_733 | 7 | 27 | 0.00000000120939 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_27 | 8 | 8 | 1.16056e-18 |
| Brassica oleracea | C5 | 6 | CH_bol_447 | 4 | 9 | 0.0000113629 |
| Camellia sinensis var. sinensis | Chr6 | 6 | CH_camsi_216 | 6 | 9 | 0.00000000000778072 |
| Cannabis sativa | NC_044370.1 | 6 | CH_cansat_161 | 6 | 26 | 0.00000000836926 |
| Capsicum annuum | PGAv.1.6.scaffold334 | 6 | CH_can_518 | 3 | 3 | 0.000055854 |
| Cucumis sativus L. | chr7 | 6 | CH_csa_219 | 4 | 6 | 0.000000939554 |
| Erythranthe guttata | scaffold_2 | 6 | CH_egut_202 | 5 | 7 | 0.00000000254426 |
| Magnolia biondii | Chr19 | 6 | CH_mbi_261 | 5 | 8 | 0.00000000153434 |
| Manihot esculenta | Chromosome14 | 6 | CH_mes_603 | 3 | 4 | 0.000256604 |
| Medicago truncatula | chr3 | 6 | CH_mtr_1004 | 3 | 4 | 0.0000786573 |
| Nelumbo nucifera | chr4 | 6 | CH_nnu_183 | 4 | 4 | 0.0000000547166 |
| Punica granatum | NC_045134.1 | 6 | CH_pgr_333 | 4 | 7 | 0.00000600026 |
| Salix brachista | GWHAAZH00000018 | 6 | CH_sbr_570 | 4 | 15 | 0.000252673 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1041 | 5 | 9 | 0.0000000689267 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_2610 | 3 | 4 | 0.000812818 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_536 | 7 | 14 | 0.00000000000475918 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_733 | 7 | 27 | 0.00000000120939 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_27 | 8 | 8 | 1.16056e-18 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |