Functional clusters
Information
- Type InterPro
- Description Ion transport domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-8 | 5 | CH_aar_135 | 4 | 4 | 0.0000000466503 |
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_473 | 3 | 4 | 0.000117416 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 5 | CH_arhy_701 | 4 | 8 | 0.00000430611 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_304 | 3 | 3 | 0.0000049986 |
| Brassica carinata | ChrC09 | 5 | CH_bca_1258 | 3 | 3 | 0.0000563153 |
| Brassica carinata | ChrB04 | 5 | CH_bca_1259 | 3 | 3 | 0.0000563153 |
| Brassica napus | A05 | 5 | CH_bna_994 | 3 | 3 | 0.0000567124 |
| Brassica napus | C05 | 5 | CH_bna_995 | 3 | 3 | 0.0000567124 |
| Brassica oleracea | C5 | 5 | CH_bol_580 | 3 | 4 | 0.0000848554 |
| Brassica rapa | A05 | 5 | CH_bra_321 | 3 | 3 | 0.0000317389 |
| Cannabis sativa | NC_044374.1 | 5 | CH_cansat_294 | 4 | 10 | 0.00000421943 |
| Cicer arietinum L. | Ca_LG7_v3 | 5 | CH_car_166 | 3 | 3 | 0.0000208993 |
| Corylus avellana | 1 | 5 | CH_cav_46 | 9 | 30 | 1.12042e-16 |
| Cardamine hirsuta | Chr4 | 5 | CH_chi_274 | 4 | 5 | 0.000000155756 |
| Fragaria vesca | Fvb7 | 5 | CH_fve_159 | 9 | 75 | 0.0000000000728894 |
| Glycine max | Gm16 | 5 | CH_gma_308 | 4 | 4 | 0.0000000518811 |
| Glycine max | Gm09 | 5 | CH_gma_309 | 4 | 4 | 0.0000000518811 |
| Helianthus annuus | HanXRQChr17 | 5 | CH_han_935 | 3 | 4 | 0.00012706 |
| Hydrangea macrophylla | Hma1.2p1_0295F.1 | 5 | CH_hma_265 | 3 | 6 | 0.0000813447 |
| Lotus japonicus | chr2 | 5 | CH_lja_69 | 5 | 5 | 0.0000000000333264 |
| Magnolia biondii | Chr13 | 5 | CH_mbi_673 | 3 | 4 | 0.000018816 |
| Malus domestica | Chr01 | 5 | CH_mdo_54 | 12 | 55 | 2.43737e-19 |
| Manihot esculenta | Chromosome04 | 5 | CH_mes_271 | 4 | 4 | 0.0000000357682 |
| Medicago truncatula | chr6 | 5 | CH_mtr_470 | 5 | 16 | 0.0000000157828 |
| Prunus persica | Pp02 | 5 | CH_ppe_654 | 3 | 3 | 0.000195542 |
| Phaseolus vulgaris | Chr04 | 5 | CH_pvu_85 | 6 | 6 | 0.000000000000028615 |
| Quercus lobata | 11 | 5 | CH_qlo_168 | 12 | 50 | 1.34003e-19 |
| Quercus lobata | 1 | 5 | CH_qlo_404 | 6 | 7 | 0.0000000000020947 |
| Quercus lobata | 9 | 5 | CH_qlo_422 | 7 | 16 | 0.00000000000446602 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_110 | 11 | 34 | 4.60421e-19 |
| Salix brachista | GWHAAZH00000012 | 5 | CH_sbr_429 | 3 | 3 | 0.0000356427 |
| Sechium edule | LG07 | 5 | CH_sed_90 | 5 | 6 | 0.000000000439138 |
| Solanum lycopersicum | SL4.0ch05 | 5 | CH_sly_653 | 3 | 4 | 0.000102458 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_617 | 3 | 5 | 0.000133265 |
| Tripterygium wilfordii | NC_052249.1 | 5 | CH_twi_170 | 4 | 5 | 0.000000106297 |
| Vigna mungo | CM024077.1 | 5 | CH_vmu_81 | 5 | 6 | 0.0000000000931028 |
| Aethionema arabicum | LG-8 | 6 | CH_aar_135 | 4 | 4 | 0.0000000466503 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_473 | 3 | 4 | 0.000117416 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 6 | CH_arhy_701 | 4 | 8 | 0.00000430611 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_304 | 3 | 3 | 0.0000049986 |
| Brassica carinata | ChrC09 | 6 | CH_bca_1258 | 3 | 3 | 0.0000563153 |
| Brassica carinata | ChrB04 | 6 | CH_bca_1259 | 3 | 3 | 0.0000563153 |
| Brassica napus | A05 | 6 | CH_bna_994 | 3 | 3 | 0.0000567124 |
| Brassica napus | C05 | 6 | CH_bna_995 | 3 | 3 | 0.0000567124 |
| Brassica oleracea | C5 | 6 | CH_bol_580 | 3 | 4 | 0.0000848554 |
| Brassica rapa | A05 | 6 | CH_bra_321 | 3 | 3 | 0.0000317389 |
| Cannabis sativa | NC_044374.1 | 6 | CH_cansat_294 | 4 | 10 | 0.00000421943 |
| Cicer arietinum L. | Ca_LG7_v3 | 6 | CH_car_166 | 3 | 3 | 0.0000208993 |
| Corylus avellana | 1 | 6 | CH_cav_46 | 9 | 30 | 1.12042e-16 |
| Cardamine hirsuta | Chr4 | 6 | CH_chi_274 | 4 | 5 | 0.000000155756 |
| Cucumis melo | chr06 | 6 | CH_cme_254 | 3 | 3 | 0.000017357 |
| Fragaria vesca | Fvb7 | 6 | CH_fve_159 | 9 | 75 | 0.0000000000728894 |
| Glycine max | Gm16 | 6 | CH_gma_308 | 4 | 4 | 0.0000000518811 |
| Glycine max | Gm09 | 6 | CH_gma_309 | 4 | 4 | 0.0000000518811 |
| Helianthus annuus | HanXRQChr17 | 6 | CH_han_935 | 3 | 4 | 0.00012706 |
| Hydrangea macrophylla | Hma1.2p1_0295F.1 | 6 | CH_hma_265 | 3 | 6 | 0.0000813447 |
| Lotus japonicus | chr2 | 6 | CH_lja_69 | 5 | 5 | 0.0000000000333264 |
| Magnolia biondii | Chr13 | 6 | CH_mbi_673 | 3 | 4 | 0.000018816 |
| Malus domestica | Chr01 | 6 | CH_mdo_54 | 12 | 55 | 2.43737e-19 |
| Manihot esculenta | Chromosome04 | 6 | CH_mes_271 | 4 | 4 | 0.0000000357682 |
| Medicago truncatula | chr6 | 6 | CH_mtr_470 | 5 | 16 | 0.0000000157828 |
| Prunus persica | Pp02 | 6 | CH_ppe_654 | 3 | 3 | 0.000195542 |
| Phaseolus vulgaris | Chr04 | 6 | CH_pvu_85 | 6 | 6 | 0.000000000000028615 |
| Quercus lobata | 11 | 6 | CH_qlo_168 | 12 | 50 | 1.34003e-19 |
| Quercus lobata | 1 | 6 | CH_qlo_404 | 6 | 7 | 0.0000000000020947 |
| Quercus lobata | 9 | 6 | CH_qlo_422 | 7 | 16 | 0.00000000000446602 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_110 | 11 | 34 | 4.60421e-19 |
| Salix brachista | GWHAAZH00000012 | 6 | CH_sbr_429 | 3 | 3 | 0.0000356427 |
| Sechium edule | LG07 | 6 | CH_sed_90 | 5 | 6 | 0.000000000439138 |
| Solanum lycopersicum | SL4.0ch05 | 6 | CH_sly_653 | 3 | 4 | 0.000102458 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_617 | 3 | 5 | 0.000133265 |
| Tripterygium wilfordii | NC_052249.1 | 6 | CH_twi_170 | 4 | 5 | 0.000000106297 |
| Vigna mungo | CM024077.1 | 6 | CH_vmu_81 | 5 | 6 | 0.0000000000931028 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |