Functional clusters

Information

  • Type InterPro
  • Description Branched-chain amino acid aminotransferase II

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 5 CH_arhy_1286 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 5 CH_arhy_473 3 3 0.0000000752906
Arabidopsis thaliana Chr1 5 CH_ath_540 2 2 0.000429738
Beta vulgaris Chr8_EL10_PGA_scaffold4 5 CH_bvu_519 2 2 0.000827917
Citrus clementina scaffold_8 5 CH_ccl_226 4 7 0.00000000202798
Chenopodium quinoa C_Quinoa_Scaffold_2896 5 CH_cqu_360 3 3 0.000000282885
Durio zibethinus NW_019167915.1 5 CH_dzi_620 2 2 0.000973326
Erigeron canadensis Conyza_canadensis_scaffold:7 5 CH_eca_715 2 3 0.000403835
Fragaria vesca Fvb2 5 CH_fve_775 2 2 0.000589102
Glycine max Gm07 5 CH_gma_930 2 2 0.00079707
Lupinus albus Lalb_Chr09 5 CH_lal_672 2 2 0.000524824
Manihot esculenta Chromosome05 5 CH_mes_708 2 2 0.000915947
Manihot esculenta Chromosome18 5 CH_mes_709 2 2 0.000915947
Medicago truncatula chr4 5 CH_mtr_1150 2 2 0.000246518
Olea europaea chr18 5 CH_oeu_513 2 2 0.000320273
Petunia axillaris Peaxi162Scf00628 5 CH_pax_608 2 2 0.000422134
Populus trichocarpa Chr09 5 CH_ptr_660 2 2 0.000346801
Phaseolus vulgaris Chr02 5 CH_pvu_582 2 2 0.000440836
Quercus lobata 11 5 CH_qlo_876 3 5 0.00000039979
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_1460 2 2 0.00083717
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_915 3 13 0.0000238439
Solanum pennellii Spenn-ch04 5 CH_spe_780 2 2 0.00044479
Theobroma cacao Chromosome_8 5 CH_tca_354 3 4 0.000000643614
Vigna mungo CM024069.1 5 CH_vmu_499 2 2 0.000387685
Vitis vinifera chr18 5 CH_vvi_487 2 2 0.000076063
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 6 CH_arhy_1286 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 6 CH_arhy_473 3 3 0.0000000752906
Arabidopsis thaliana Chr1 6 CH_ath_540 2 2 0.000429738
Beta vulgaris Chr8_EL10_PGA_scaffold4 6 CH_bvu_519 2 2 0.000827917
Citrus clementina scaffold_8 6 CH_ccl_226 4 7 0.00000000202798
Chenopodium quinoa C_Quinoa_Scaffold_2896 6 CH_cqu_360 3 3 0.000000282885
Durio zibethinus NW_019167915.1 6 CH_dzi_620 2 2 0.000973326
Erigeron canadensis Conyza_canadensis_scaffold:7 6 CH_eca_715 2 3 0.000403835
Fragaria x ananassa Fvb2-2 6 CH_fan_538 3 5 0.0000034916
Fragaria vesca Fvb2 6 CH_fve_775 2 2 0.000589102
Glycine max Gm07 6 CH_gma_930 2 2 0.00079707
Lupinus albus Lalb_Chr09 6 CH_lal_672 2 2 0.000524824
Manihot esculenta Chromosome05 6 CH_mes_708 2 2 0.000915947
Manihot esculenta Chromosome18 6 CH_mes_709 2 2 0.000915947
Medicago truncatula chr4 6 CH_mtr_1150 2 2 0.000246518
Olea europaea chr18 6 CH_oeu_513 2 2 0.000320273
Petunia axillaris Peaxi162Scf00628 6 CH_pax_608 2 2 0.000422134
Populus trichocarpa Chr09 6 CH_ptr_660 2 2 0.000346801
Phaseolus vulgaris Chr02 6 CH_pvu_582 2 2 0.000440836
Quercus lobata 11 6 CH_qlo_876 3 5 0.00000039979
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_1460 2 2 0.00083717
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_915 3 13 0.0000238439
Solanum pennellii Spenn-ch04 6 CH_spe_780 2 2 0.00044479
Theobroma cacao Chromosome_8 6 CH_tca_354 3 4 0.000000643614
Vigna mungo CM024069.1 6 CH_vmu_499 2 2 0.000387685
Vitis vinifera chr18 6 CH_vvi_487 2 2 0.000076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001