Functional clusters
Information
- Type InterPro
- Description Late embryogenesis abundant protein, LEA_1 subgroup
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR03 | 5 | CH_aox_215 | 3 | 4 | 0.00000216078 |
| Brassica carinata | ChrB01 | 5 | CH_bca_1863 | 3 | 25 | 0.000572599 |
| Brassica carinata | ChrB02 | 5 | CH_bca_219 | 5 | 21 | 0.0000000000637097 |
| Capsicum annuum | PGAv.1.6.scaffold1161 | 5 | CH_can_295 | 3 | 3 | 0.000000102372 |
| Citrus clementina | scaffold_6 | 5 | CH_ccl_710 | 2 | 2 | 0.000492187 |
| Ceratophyllum demersum | 2 | 5 | CH_cde_407 | 2 | 2 | 0.000473878 |
| Carpinus fangiana | Cfa08 | 5 | CH_cfa_149 | 4 | 7 | 0.000000000684046 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_711 | 2 | 2 | 0.000353461 |
| Gossypium raimondii | Chr02 | 5 | CH_gra_695 | 2 | 3 | 0.000964932 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_1024 | 2 | 2 | 0.000291397 |
| Manihot esculenta | Chromosome15 | 5 | CH_mes_631 | 2 | 2 | 0.000366379 |
| Medicago truncatula | chr7 | 5 | CH_mtr_586 | 3 | 4 | 0.000000202561 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_87 | 4 | 5 | 0.0000000000586735 |
| Nicotiana tabacum | Nitab4.5_0000105 | 5 | CH_nta_17 | 5 | 5 | 0.0000000000000228393 |
| Petunia axillaris | Peaxi162Scf00003 | 5 | CH_pax_181 | 3 | 3 | 0.0000000742514 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_559 | 2 | 2 | 0.000450214 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_875 | 2 | 2 | 0.000387184 |
| Simmondsia chinensis | GWHAASQ00000019 | 5 | CH_sci_388 | 2 | 2 | 0.000255428 |
| Solanum lycopersicum | SL4.0ch10 | 5 | CH_sly_345 | 3 | 4 | 0.000000413372 |
| Solanum pennellii | Spenn-ch10 | 5 | CH_spe_261 | 3 | 3 | 0.0000000593529 |
| Solanum tuberosum | ST4.03ch10 | 5 | CH_stu_319 | 3 | 3 | 0.0000000393922 |
| Selenicereus undatus | Scaffold_10417 | 5 | CH_sun_245 | 2 | 3 | 0.000217984 |
| Trochodendron aralioides | group15 | 5 | CH_tar_771 | 2 | 2 | 0.00036022 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_682 | 2 | 2 | 0.000439432 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_591 | 2 | 2 | 0.000278772 |
| Vigna mungo | CM024070.1 | 5 | CH_vmu_517 | 2 | 2 | 0.000387685 |
| Vitis vinifera | chr8 | 5 | CH_vvi_276 | 3 | 3 | 0.000000086787 |
| Aquilegia oxysepala | CHR03 | 6 | CH_aox_215 | 3 | 4 | 0.00000216078 |
| Brassica carinata | ChrB01 | 6 | CH_bca_1863 | 3 | 25 | 0.000572599 |
| Brassica carinata | ChrB02 | 6 | CH_bca_219 | 5 | 21 | 0.0000000000637097 |
| Capsicum annuum | PGAv.1.6.scaffold1161 | 6 | CH_can_295 | 3 | 3 | 0.000000102372 |
| Citrus clementina | scaffold_6 | 6 | CH_ccl_710 | 2 | 2 | 0.000492187 |
| Ceratophyllum demersum | 2 | 6 | CH_cde_407 | 2 | 2 | 0.000473878 |
| Carpinus fangiana | Cfa08 | 6 | CH_cfa_149 | 4 | 7 | 0.000000000684046 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_711 | 2 | 2 | 0.000353461 |
| Gossypium raimondii | Chr02 | 6 | CH_gra_695 | 2 | 3 | 0.000964932 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_1024 | 2 | 2 | 0.000291397 |
| Manihot esculenta | Chromosome15 | 6 | CH_mes_631 | 2 | 2 | 0.000366379 |
| Medicago truncatula | chr7 | 6 | CH_mtr_586 | 3 | 4 | 0.000000202561 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_87 | 4 | 5 | 0.0000000000586735 |
| Nicotiana tabacum | Nitab4.5_0000105 | 6 | CH_nta_17 | 5 | 5 | 0.0000000000000228393 |
| Petunia axillaris | Peaxi162Scf00003 | 6 | CH_pax_181 | 3 | 3 | 0.0000000742514 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_559 | 2 | 2 | 0.000450214 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_875 | 2 | 2 | 0.000387184 |
| Simmondsia chinensis | GWHAASQ00000019 | 6 | CH_sci_388 | 2 | 2 | 0.000255428 |
| Solanum lycopersicum | SL4.0ch10 | 6 | CH_sly_345 | 3 | 4 | 0.000000413372 |
| Solanum pennellii | Spenn-ch10 | 6 | CH_spe_261 | 3 | 3 | 0.0000000593529 |
| Solanum tuberosum | ST4.03ch10 | 6 | CH_stu_319 | 3 | 3 | 0.0000000393922 |
| Selenicereus undatus | Scaffold_10417 | 6 | CH_sun_245 | 2 | 3 | 0.000217984 |
| Trochodendron aralioides | group15 | 6 | CH_tar_771 | 2 | 2 | 0.00036022 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_682 | 2 | 2 | 0.000439432 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_591 | 2 | 2 | 0.000278772 |
| Vigna mungo | CM024070.1 | 6 | CH_vmu_517 | 2 | 2 | 0.000387685 |
| Vitis vinifera | chr8 | 6 | CH_vvi_276 | 3 | 3 | 0.000000086787 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |