Functional clusters
Information
- Type InterPro
- Description Deoxyxylulose-5-phosphate synthase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 5 | CH_atr_635 | 2 | 2 | 0.000794407 |
| Cicer arietinum L. | Ca_LG4_v3 | 5 | CH_car_90 | 3 | 3 | 0.000000318032 |
| Citrullus lanatus | CG_Chr10 | 5 | CH_cla_383 | 2 | 2 | 0.000887115 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 5 | CH_eca_249 | 3 | 3 | 0.0000000604069 |
| Erythranthe guttata | scaffold_1 | 5 | CH_egut_632 | 3 | 18 | 0.00036249 |
| Gossypium hirsutum | A08 | 5 | CH_ghi_660 | 3 | 6 | 0.00000470422 |
| Gossypium hirsutum | D08 | 5 | CH_ghi_693 | 3 | 7 | 0.00000823154 |
| Gossypium raimondii | Chr04 | 5 | CH_gra_315 | 3 | 6 | 0.00000172406 |
| Helianthus annuus | HanXRQChr16 | 5 | CH_han_1127 | 2 | 2 | 0.000579643 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_357 | 4 | 6 | 0.00000000690798 |
| Magnolia biondii | Chr16 | 5 | CH_mbi_121 | 5 | 5 | 0.0000000000000330508 |
| Magnolia biondii | Chr16 | 5 | CH_mbi_503 | 3 | 3 | 0.000000778378 |
| Medicago truncatula | chr8 | 5 | CH_mtr_1341 | 2 | 2 | 0.000616295 |
| Petunia axillaris | Peaxi162Scf00359 | 5 | CH_pax_283 | 3 | 5 | 0.00000259807 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_730 | 2 | 2 | 0.000782452 |
| Simmondsia chinensis | GWHAASQ00000013 | 5 | CH_sci_140 | 3 | 3 | 0.000000217487 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1208 | 3 | 4 | 0.000000498328 |
| Selenicereus undatus | Scaffold_2055 | 5 | CH_sun_329 | 2 | 2 | 0.000435983 |
| Theobroma cacao | Chromosome_1 | 5 | CH_tca_749 | 2 | 2 | 0.000732386 |
| Utricularia gibba | unitig_699 | 5 | CH_ugi_371 | 2 | 2 | 0.000820479 |
| Utricularia gibba | unitig_62 | 5 | CH_ugi_372 | 2 | 2 | 0.000820479 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 6 | CH_atr_635 | 2 | 2 | 0.000794407 |
| Cicer arietinum L. | Ca_LG4_v3 | 6 | CH_car_90 | 3 | 3 | 0.000000318032 |
| Citrullus lanatus | CG_Chr10 | 6 | CH_cla_383 | 2 | 2 | 0.000887115 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 6 | CH_eca_249 | 3 | 3 | 0.0000000604069 |
| Erythranthe guttata | scaffold_1 | 6 | CH_egut_632 | 3 | 18 | 0.00036249 |
| Gossypium hirsutum | A08 | 6 | CH_ghi_660 | 3 | 6 | 0.00000470422 |
| Gossypium hirsutum | D08 | 6 | CH_ghi_693 | 3 | 7 | 0.00000823154 |
| Gossypium raimondii | Chr04 | 6 | CH_gra_315 | 3 | 6 | 0.00000172406 |
| Helianthus annuus | HanXRQChr16 | 6 | CH_han_1127 | 2 | 2 | 0.000579643 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_357 | 4 | 6 | 0.00000000690798 |
| Magnolia biondii | Chr16 | 6 | CH_mbi_121 | 5 | 5 | 0.0000000000000330508 |
| Magnolia biondii | Chr16 | 6 | CH_mbi_503 | 3 | 3 | 0.000000778378 |
| Medicago truncatula | chr8 | 6 | CH_mtr_1341 | 2 | 2 | 0.000616295 |
| Petunia axillaris | Peaxi162Scf00359 | 6 | CH_pax_283 | 3 | 5 | 0.00000259807 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_730 | 2 | 2 | 0.000782452 |
| Simmondsia chinensis | GWHAASQ00000013 | 6 | CH_sci_140 | 3 | 3 | 0.000000217487 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1208 | 3 | 4 | 0.000000498328 |
| Selenicereus undatus | Scaffold_2055 | 6 | CH_sun_329 | 2 | 2 | 0.000435983 |
| Theobroma cacao | Chromosome_1 | 6 | CH_tca_749 | 2 | 2 | 0.000732386 |
| Utricularia gibba | unitig_699 | 6 | CH_ugi_371 | 2 | 2 | 0.000820479 |
| Utricularia gibba | unitig_62 | 6 | CH_ugi_372 | 2 | 2 | 0.000820479 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |