Functional clusters
Information
- Type InterPro
- Description Uncharacterised domain XH
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_368 | 5 | CH_aag_299 | 3 | 10 | 0.000254525 |
| Acer truncatum | chr3 | 5 | CH_acertr_77 | 5 | 6 | 0.000000000000880253 |
| Actinidia chinensis | Lachesis_group3 | 5 | CH_ach_447 | 2 | 2 | 0.000325928 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_16 | 5 | CH_amhyb_121 | 3 | 3 | 0.000000595202 |
| Aquilegia oxysepala | CHR02 | 5 | CH_aox_32 | 9 | 48 | 0.0000000000000242882 |
| Amborella trichopoda | AmTr_v1.0_scaffold00012 | 5 | CH_atr_125 | 4 | 9 | 0.000000000947301 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 5 | CH_bvu_173 | 3 | 3 | 0.000000102821 |
| Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_1423 | 2 | 2 | 0.000687821 |
| Coffea canephora | chr2 | 5 | CH_ccan_42 | 4 | 13 | 0.00000000000204394 |
| Citrus clementina | scaffold_4 | 5 | CH_ccl_771 | 2 | 2 | 0.000820311 |
| Cardamine hirsuta | Chr1 | 5 | CH_chi_400 | 3 | 4 | 0.0000104314 |
| Cardamine hirsuta | Chr2 | 5 | CH_chi_449 | 4 | 33 | 0.0000402194 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1995 | 5 | CH_cqu_233 | 4 | 5 | 0.00000000290354 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3422 | 5 | CH_cqu_451 | 3 | 3 | 0.0000018859 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4317 | 5 | CH_cqu_452 | 3 | 3 | 0.0000018859 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1703 | 5 | CH_cqu_588 | 3 | 5 | 0.0000188494 |
| Durio zibethinus | NW_019167926.1 | 5 | CH_dzi_55 | 6 | 20 | 0.00000000000000130527 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_65 | 6 | 9 | 2.81572e-16 |
| Gossypium hirsutum | D10 | 5 | CH_ghi_578 | 4 | 18 | 0.00000104315 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_372 | 4 | 28 | 0.0000128389 |
| Helianthus annuus | HanXRQChr04 | 5 | CH_han_1215 | 3 | 24 | 0.000994273 |
| Lotus japonicus | chr6 | 5 | CH_lja_14 | 8 | 9 | 1.74497e-22 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_653 | 3 | 8 | 0.0000168594 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_199 | 5 | 12 | 0.000000000180808 |
| Magnolia biondii | Chr05 | 5 | CH_mbi_153 | 4 | 5 | 0.00000000000515518 |
| Manihot esculenta | Chromosome04 | 5 | CH_mes_681 | 2 | 2 | 0.000610631 |
| Medicago truncatula | chr3 | 5 | CH_mtr_428 | 4 | 6 | 0.00000000567823 |
| Medicago truncatula | chr2 | 5 | CH_mtr_702 | 3 | 3 | 0.00000141802 |
| Prunus persica | Pp06 | 5 | CH_ppe_328 | 3 | 3 | 0.0000000834721 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_1144 | 3 | 9 | 0.000455844 |
| Quercus lobata | 8 | 5 | CH_qlo_1018 | 3 | 3 | 0.00000326271 |
| Quercus lobata | 1 | 5 | CH_qlo_579 | 4 | 4 | 0.00000000126344 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_1258 | 3 | 13 | 0.000247717 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_374 | 5 | 19 | 0.000000000439977 |
| Rhododendron simsii | chr01 | 5 | CH_rsi_329 | 4 | 7 | 0.00000000930608 |
| Salvia bowleyana | GWHASIU00000002 | 5 | CH_sbo_437 | 4 | 43 | 0.0000171487 |
| Schrenkiella parvula | ch5-3 | 5 | CH_spa_147 | 4 | 15 | 0.00000098629 |
| Solanum pennellii | Spenn-ch06 | 5 | CH_spe_389 | 3 | 5 | 0.00000249221 |
| Selenicereus undatus | Scaffold_33679 | 5 | CH_sun_41 | 4 | 6 | 0.00000000120832 |
| Trochodendron aralioides | group7 | 5 | CH_tar_126 | 4 | 4 | 0.000000000214251 |
| Trochodendron aralioides | group18 | 5 | CH_tar_386 | 3 | 4 | 0.00000356771 |
| Tarenaya hassleriana | NW_010968505.1 | 5 | CH_tha_298 | 2 | 2 | 0.000419082 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 5 | CH_tpr_116 | 4 | 4 | 0.000000000644196 |
| Tripterygium wilfordii | NC_052240.1 | 5 | CH_twi_524 | 2 | 2 | 0.00083626 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_188 | 4 | 7 | 0.0000000601784 |
| Vitis vinifera | chr11 | 5 | CH_vvi_771 | 2 | 2 | 0.00076063 |
| Vitis vinifera | chr13 | 5 | CH_vvi_772 | 2 | 2 | 0.00076063 |
| Anthoceros agrestis | Sc2ySwM_368 | 6 | CH_aag_299 | 3 | 10 | 0.000254525 |
| Acer truncatum | chr3 | 6 | CH_acertr_77 | 5 | 6 | 0.000000000000880253 |
| Actinidia chinensis | Lachesis_group3 | 6 | CH_ach_447 | 2 | 2 | 0.000325928 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_16 | 6 | CH_amhyb_121 | 3 | 3 | 0.000000595202 |
| Aquilegia oxysepala | CHR02 | 6 | CH_aox_32 | 9 | 48 | 0.0000000000000242882 |
| Amborella trichopoda | AmTr_v1.0_scaffold00012 | 6 | CH_atr_125 | 4 | 9 | 0.000000000947301 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 6 | CH_bvu_173 | 3 | 3 | 0.000000102821 |
| Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_1423 | 2 | 2 | 0.000687821 |
| Coffea canephora | chr2 | 6 | CH_ccan_42 | 4 | 13 | 0.00000000000204394 |
| Citrus clementina | scaffold_4 | 6 | CH_ccl_771 | 2 | 2 | 0.000820311 |
| Cardamine hirsuta | Chr1 | 6 | CH_chi_400 | 3 | 4 | 0.0000104314 |
| Cardamine hirsuta | Chr2 | 6 | CH_chi_449 | 4 | 33 | 0.0000402194 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1995 | 6 | CH_cqu_233 | 4 | 5 | 0.00000000290354 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3422 | 6 | CH_cqu_451 | 3 | 3 | 0.0000018859 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4317 | 6 | CH_cqu_452 | 3 | 3 | 0.0000018859 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1703 | 6 | CH_cqu_588 | 3 | 5 | 0.0000188494 |
| Durio zibethinus | NW_019167926.1 | 6 | CH_dzi_55 | 6 | 20 | 0.00000000000000130527 |
| Fragaria x ananassa | Fvb3-4 | 6 | CH_fan_192 | 4 | 5 | 0.000000000389159 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_65 | 6 | 9 | 2.81572e-16 |
| Gossypium hirsutum | D10 | 6 | CH_ghi_578 | 4 | 18 | 0.00000104315 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_372 | 4 | 28 | 0.0000128389 |
| Helianthus annuus | HanXRQChr04 | 6 | CH_han_1215 | 3 | 24 | 0.000994273 |
| Lotus japonicus | chr6 | 6 | CH_lja_14 | 8 | 9 | 1.74497e-22 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_653 | 3 | 8 | 0.0000168594 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_199 | 5 | 12 | 0.000000000180808 |
| Magnolia biondii | Chr05 | 6 | CH_mbi_153 | 4 | 5 | 0.00000000000515518 |
| Manihot esculenta | Chromosome04 | 6 | CH_mes_681 | 2 | 2 | 0.000610631 |
| Medicago truncatula | chr3 | 6 | CH_mtr_428 | 4 | 6 | 0.00000000567823 |
| Medicago truncatula | chr2 | 6 | CH_mtr_702 | 3 | 3 | 0.00000141802 |
| Prunus persica | Pp06 | 6 | CH_ppe_328 | 3 | 3 | 0.0000000834721 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_1144 | 3 | 9 | 0.000455844 |
| Quercus lobata | 8 | 6 | CH_qlo_1018 | 3 | 3 | 0.00000326271 |
| Quercus lobata | 1 | 6 | CH_qlo_579 | 4 | 4 | 0.00000000126344 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_1258 | 3 | 13 | 0.000247717 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_374 | 5 | 19 | 0.000000000439977 |
| Rhododendron simsii | chr01 | 6 | CH_rsi_329 | 4 | 7 | 0.00000000930608 |
| Salvia bowleyana | GWHASIU00000002 | 6 | CH_sbo_437 | 4 | 43 | 0.0000171487 |
| Schrenkiella parvula | ch5-3 | 6 | CH_spa_147 | 4 | 15 | 0.00000098629 |
| Solanum pennellii | Spenn-ch06 | 6 | CH_spe_389 | 3 | 5 | 0.00000249221 |
| Selenicereus undatus | Scaffold_33679 | 6 | CH_sun_41 | 4 | 6 | 0.00000000120832 |
| Trochodendron aralioides | group7 | 6 | CH_tar_126 | 4 | 4 | 0.000000000214251 |
| Trochodendron aralioides | group18 | 6 | CH_tar_386 | 3 | 4 | 0.00000356771 |
| Tarenaya hassleriana | NW_010968505.1 | 6 | CH_tha_298 | 2 | 2 | 0.000419082 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 6 | CH_tpr_116 | 4 | 4 | 0.000000000644196 |
| Tripterygium wilfordii | NC_052240.1 | 6 | CH_twi_524 | 2 | 2 | 0.00083626 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_188 | 4 | 7 | 0.0000000601784 |
| Vitis vinifera | chr11 | 6 | CH_vvi_771 | 2 | 2 | 0.00076063 |
| Vitis vinifera | chr13 | 6 | CH_vvi_772 | 2 | 2 | 0.00076063 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |