Functional clusters

Information

  • Type InterPro
  • Description SAM dependent carboxyl methyltransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 5 CH_aag_221 4 18 0.0000960801
Anthoceros agrestis Sc2ySwM_344 5 CH_aag_58 5 7 0.00000000064132
Acer truncatum chr12 5 CH_acertr_496 3 3 0.0000335102
Actinidia chinensis Lachesis_group10 5 CH_ach_193 3 3 0.0000042891
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 5 CH_arhy_121 8 12 8.75526e-19
Amborella trichopoda AmTr_v1.0_scaffold00058 5 CH_atr_316 3 4 0.0000108262
Brassica carinata ChrC07 5 CH_bca_1992 3 5 0.000751128
Brassica carinata ChrB06 5 CH_bca_1993 3 5 0.000751128
Brassica carinata ChrC06 5 CH_bca_313 5 7 0.00000000128651
Brassica carinata ChrC08 5 CH_bca_330 7 45 0.00000000210266
Brassica carinata ChrB05 5 CH_bca_93 7 10 0.00000000000000571177
Brassica napus C05 5 CH_bna_205 6 14 0.0000000000921991
Brassica oleracea C2 5 CH_bol_273 4 6 0.000000233893
Brassica oleracea C9 5 CH_bol_47 6 6 0.00000000000000683859
Beta vulgaris Chr3_EL10_PGA_scaffold7 5 CH_bvu_134 4 4 0.00000000824954
Beta vulgaris Chr1_EL10_PGA_scaffold3 5 CH_bvu_292 3 3 0.0000117216
Cannabis sativa NC_044377.1 5 CH_cansat_33 10 44 7.8424e-18
Capsicum annuum PGAv.1.6.scaffold1681 5 CH_can_288 4 4 0.0000000784466
Capsicum annuum PGAv.1.6.scaffold282 5 CH_can_6 15 15 1.02512e-40
Capsicum annuum PGAv.1.6.scaffold700 5 CH_can_647 3 4 0.000244791
Corylus avellana 1 5 CH_cav_263 4 8 0.000000366146
Coffea canephora chr9 5 CH_ccan_184 5 77 0.000000153195
Coffea canephora chr1 5 CH_ccan_71 6 62 0.0000000000498643
Carya illinoinensis Chr16 5 CH_cil_352 4 6 0.000000254205
Carya illinoinensis Chr07 5 CH_cil_37 9 9 3.09544e-24
Citrullus lanatus CG_Chr06 5 CH_cla_155 3 3 0.00000537133
Corchorus olitorius AWUE01019102.1 5 CH_col_51 4 5 0.0000000130835
Carica papaya supercontig_116 5 CH_cpa_230 3 3 0.0000110625
Carica papaya supercontig_6 5 CH_cpa_72 5 10 0.00000000131931
Chenopodium quinoa C_Quinoa_Scaffold_1995 5 CH_cqu_694 3 4 0.0000961223
Cucumis sativus L. chr6 5 CH_csa_49 6 7 0.00000000000000109562
Daucus carota DCARv2_Chr9 5 CH_dca_186 5 23 0.0000000482096
Davidia involucrata GWHABJS00000019 5 CH_din_113 7 27 0.00000000000364281
Davidia involucrata GWHABJS00000012 5 CH_din_418 3 3 0.0000186098
Durio zibethinus NW_019167960.1 5 CH_dzi_174 4 6 0.000000032754
Eucalyptus grandis Chr11 5 CH_egr_254 7 8 6.82813e-16
Eucalyptus grandis Chr08 5 CH_egr_64 13 17 1.48967e-31
Gossypium hirsutum A10 5 CH_ghi_1089 3 7 0.000341576
Gossypium hirsutum D10 5 CH_ghi_334 5 11 0.00000000101182
Glycine max Gm09 5 CH_gma_36 8 8 6.49304e-22
Gossypium raimondii Chr11 5 CH_gra_77 7 12 2.52158e-16
Helianthus annuus HanXRQChr11 5 CH_han_238 5 6 0.0000000000503448
Hydrangea macrophylla Hma1.2p1_0500F.1 5 CH_hma_13 7 7 5.08306e-19
Lupinus albus Lalb_Chr18 5 CH_lal_262 3 3 0.00000118167
Lotus japonicus chr1 5 CH_lja_39 7 16 0.00000000000000930489
Lactuca sativa Lsat_1_v8_lg_3 5 CH_lsa_566 3 6 0.0000226543
Malus domestica Chr08 5 CH_mdo_1037 3 4 0.000139817
Malus domestica Chr14 5 CH_mdo_132 6 7 0.00000000000013255
Malus domestica Chr09 5 CH_mdo_203 5 5 0.0000000000237928
Malus domestica Chr10 5 CH_mdo_534 4 6 0.000000437128
Malus domestica Chr16 5 CH_mdo_818 3 3 0.0000349768
Manihot esculenta Chromosome15 5 CH_mes_474 3 4 0.0000452596
Medicago truncatula chr8 5 CH_mtr_1374 3 11 0.000737998
Medicago truncatula chr7 5 CH_mtr_762 4 16 0.00000334014
Nelumbo nucifera chr5 5 CH_nnu_49 6 8 0.0000000000000375871
Nicotiana tabacum Nitab4.5_0000198 5 CH_nta_30 5 7 0.00000000000575224
Olea europaea chr5 5 CH_oeu_39 5 5 0.000000000000376842
Oryza sativa ssp. japonica chr06 5 CH_osa_107 8 57 0.00000000000128939
Oryza sativa ssp. japonica chr11 5 CH_osa_180 5 10 0.00000000118412
Oryza sativa ssp. japonica chr06 5 CH_osa_61 7 10 1.81888e-16
Petunia axillaris Peaxi162Scf00047 5 CH_pax_285 3 3 0.00000270275
Petunia axillaris Peaxi162Scf00423 5 CH_pax_485 3 7 0.0000944732
Punica granatum NC_045132.1 5 CH_pgr_461 3 4 0.000184159
Prunus persica Pp05 5 CH_ppe_68 8 8 2.37161e-20
Pisum sativum chr4LG4 5 CH_psa_352 4 30 0.00000829803
Papaver somniferum NC_039363.1 5 CH_pso_240 7 39 0.0000000000316809
Papaver somniferum NC_039359.1 5 CH_pso_728 4 14 0.0000116573
Quercus lobata 3 5 CH_qlo_254 8 17 2.87445e-16
Quercus lobata 6 5 CH_qlo_717 4 4 0.0000000272693
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_33 13 18 2.13176e-32
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_470 5 11 0.0000000119472
Rosa chinensis RcHm_v2.0_Chr3 5 CH_rch_759 4 8 0.00000216526
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_943 3 3 0.0000361877
Rhododendron simsii chr04 5 CH_rsi_256 5 12 0.000000000205857
Rhododendron simsii chr08 5 CH_rsi_599 3 5 0.0000227238
Salix brachista GWHAAZH00000017 5 CH_sbr_115 6 13 0.0000000000067699
Simmondsia chinensis GWHAASQ00000022 5 CH_sci_44 6 8 0.000000000000284301
Simmondsia chinensis GWHAASQ00000004 5 CH_sci_63 5 6 0.0000000000795404
Sechium edule LG03 5 CH_sed_124 4 4 0.0000000191196
Sechium edule LG01 5 CH_sed_150 4 5 0.000000095532
Sechium edule LG07 5 CH_sed_349 3 4 0.0000892664
Sechium edule LG10 5 CH_sed_65 5 5 0.000000000015688
Sequoiadendron giganteum chr7 5 CH_sgi_480 6 8 0.00000000000105233
Sequoiadendron giganteum chr8 5 CH_sgi_83 11 11 1.68963e-29
Solanum lycopersicum SL4.0ch04 5 CH_sly_476 3 3 0.00000915189
Schrenkiella parvula ch5-5 5 CH_spa_23 6 7 0.0000000000000258545
Solanum tuberosum ST4.03ch01 5 CH_stu_19 13 29 6.75987e-31
Selenicereus undatus Scaffold_33678 5 CH_sun_157 3 5 0.0000443193
Trochodendron aralioides group0 5 CH_tar_559 3 4 0.000063223
Theobroma cacao Chromosome_1 5 CH_tca_161 6 10 0.0000000000445812
Theobroma cacao Chromosome_4 5 CH_tca_186 5 5 0.000000000161745
Tarenaya hassleriana NW_010960187.1 5 CH_tha_12 8 10 3.57111e-19
Tarenaya hassleriana NW_010961290.1 5 CH_tha_157 5 33 0.00000408322
Tarenaya hassleriana NW_010966177.1 5 CH_tha_86 4 4 0.0000000209332
Tripterygium wilfordii NC_052246.1 5 CH_twi_221 4 7 0.000001199
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_308 3 3 0.00000370452
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_359 3 4 0.0000148122
Vigna mungo CM024070.1 5 CH_vmu_121 4 5 0.00000000962791
Vanilla planifolia CM028158.1 5 CH_vpl_256 3 7 0.00000572986
Vitis vinifera chr1 5 CH_vvi_116 6 6 0.000000000000219969
Vitis vinifera chr4 5 CH_vvi_20 13 15 7.20775e-32
Vitis vinifera chr3 5 CH_vvi_538 3 3 0.0000857455
Vitis vinifera chr4 5 CH_vvi_539 3 3 0.0000857455
Zea mays 5 5 CH_zma_162 4 8 0.0000000510403
Zea mays 9 5 CH_zma_228 3 3 0.00000219616
Zea mays 4 5 CH_zma_99 4 4 0.000000000729938
Anthoceros agrestis Sc2ySwM_228 6 CH_aag_221 4 18 0.0000960801
Anthoceros agrestis Sc2ySwM_344 6 CH_aag_58 5 7 0.00000000064132
Acer truncatum chr12 6 CH_acertr_496 3 3 0.0000335102
Actinidia chinensis Lachesis_group10 6 CH_ach_193 3 3 0.0000042891
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 6 CH_arhy_121 8 12 8.75526e-19
Amborella trichopoda AmTr_v1.0_scaffold00058 6 CH_atr_316 3 4 0.0000108262
Brassica carinata ChrC07 6 CH_bca_1992 3 5 0.000751128
Brassica carinata ChrB06 6 CH_bca_1993 3 5 0.000751128
Brassica carinata ChrC06 6 CH_bca_313 5 7 0.00000000128651
Brassica carinata ChrC08 6 CH_bca_330 7 45 0.00000000210266
Brassica carinata ChrB05 6 CH_bca_93 7 10 0.00000000000000571177
Brassica napus C05 6 CH_bna_205 6 14 0.0000000000921991
Brassica oleracea C2 6 CH_bol_273 4 6 0.000000233893
Brassica oleracea C9 6 CH_bol_47 6 6 0.00000000000000683859
Beta vulgaris Chr3_EL10_PGA_scaffold7 6 CH_bvu_134 4 4 0.00000000824954
Beta vulgaris Chr1_EL10_PGA_scaffold3 6 CH_bvu_292 3 3 0.0000117216
Cannabis sativa NC_044377.1 6 CH_cansat_33 10 44 7.8424e-18
Capsicum annuum PGAv.1.6.scaffold1681 6 CH_can_288 4 4 0.0000000784466
Capsicum annuum PGAv.1.6.scaffold282 6 CH_can_6 15 15 1.02512e-40
Capsicum annuum PGAv.1.6.scaffold700 6 CH_can_647 3 4 0.000244791
Corylus avellana 1 6 CH_cav_263 4 8 0.000000366146
Coffea canephora chr9 6 CH_ccan_184 5 77 0.000000153195
Coffea canephora chr1 6 CH_ccan_71 6 62 0.0000000000498643
Carya illinoinensis Chr16 6 CH_cil_352 4 6 0.000000254205
Carya illinoinensis Chr07 6 CH_cil_37 9 9 3.09544e-24
Citrullus lanatus CG_Chr06 6 CH_cla_155 3 3 0.00000537133
Cucumis melo chr08 6 CH_cme_30 7 7 4.46896e-20
Corchorus olitorius AWUE01019102.1 6 CH_col_51 4 5 0.0000000130835
Carica papaya supercontig_116 6 CH_cpa_230 3 3 0.0000110625
Carica papaya supercontig_6 6 CH_cpa_72 5 10 0.00000000131931
Chenopodium quinoa C_Quinoa_Scaffold_1995 6 CH_cqu_694 3 4 0.0000961223
Cucumis sativus L. chr6 6 CH_csa_49 6 7 0.00000000000000109562
Daucus carota DCARv2_Chr9 6 CH_dca_186 5 23 0.0000000482096
Davidia involucrata GWHABJS00000019 6 CH_din_113 7 27 0.00000000000364281
Davidia involucrata GWHABJS00000012 6 CH_din_418 3 3 0.0000186098
Durio zibethinus NW_019167960.1 6 CH_dzi_174 4 6 0.000000032754
Eucalyptus grandis Chr11 6 CH_egr_254 7 8 6.82813e-16
Eucalyptus grandis Chr08 6 CH_egr_64 13 17 1.48967e-31
Gossypium hirsutum A10 6 CH_ghi_1089 3 7 0.000341576
Gossypium hirsutum D10 6 CH_ghi_334 5 11 0.00000000101182
Glycine max Gm09 6 CH_gma_36 8 8 6.49304e-22
Gossypium raimondii Chr11 6 CH_gra_77 7 12 2.52158e-16
Helianthus annuus HanXRQChr11 6 CH_han_238 5 6 0.0000000000503448
Hydrangea macrophylla Hma1.2p1_0500F.1 6 CH_hma_13 7 7 5.08306e-19
Lupinus albus Lalb_Chr18 6 CH_lal_262 3 3 0.00000118167
Lotus japonicus chr1 6 CH_lja_39 7 16 0.00000000000000930489
Lactuca sativa Lsat_1_v8_lg_3 6 CH_lsa_566 3 6 0.0000226543
Malus domestica Chr08 6 CH_mdo_1037 3 4 0.000139817
Malus domestica Chr14 6 CH_mdo_132 6 7 0.00000000000013255
Malus domestica Chr09 6 CH_mdo_203 5 5 0.0000000000237928
Malus domestica Chr10 6 CH_mdo_534 4 6 0.000000437128
Malus domestica Chr16 6 CH_mdo_818 3 3 0.0000349768
Manihot esculenta Chromosome15 6 CH_mes_474 3 4 0.0000452596
Medicago truncatula chr8 6 CH_mtr_1374 3 11 0.000737998
Medicago truncatula chr7 6 CH_mtr_762 4 16 0.00000334014
Nelumbo nucifera chr5 6 CH_nnu_49 6 8 0.0000000000000375871
Nicotiana tabacum Nitab4.5_0000198 6 CH_nta_30 5 7 0.00000000000575224
Olea europaea chr5 6 CH_oeu_39 5 5 0.000000000000376842
Oryza sativa ssp. japonica chr06 6 CH_osa_107 8 57 0.00000000000128939
Oryza sativa ssp. japonica chr11 6 CH_osa_180 5 10 0.00000000118412
Oryza sativa ssp. japonica chr06 6 CH_osa_61 7 10 1.81888e-16
Petunia axillaris Peaxi162Scf00047 6 CH_pax_285 3 3 0.00000270275
Petunia axillaris Peaxi162Scf00423 6 CH_pax_485 3 7 0.0000944732
Punica granatum NC_045132.1 6 CH_pgr_461 3 4 0.000184159
Prunus persica Pp05 6 CH_ppe_68 8 8 2.37161e-20
Pisum sativum chr4LG4 6 CH_psa_352 4 30 0.00000829803
Papaver somniferum NC_039363.1 6 CH_pso_240 7 39 0.0000000000316809
Papaver somniferum NC_039359.1 6 CH_pso_728 4 14 0.0000116573
Quercus lobata 3 6 CH_qlo_254 8 17 2.87445e-16
Quercus lobata 6 6 CH_qlo_717 4 4 0.0000000272693
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_33 13 18 2.13176e-32
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_470 5 11 0.0000000119472
Rosa chinensis RcHm_v2.0_Chr3 6 CH_rch_759 4 8 0.00000216526
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_943 3 3 0.0000361877
Rhododendron simsii chr04 6 CH_rsi_256 5 12 0.000000000205857
Rhododendron simsii chr08 6 CH_rsi_599 3 5 0.0000227238
Salix brachista GWHAAZH00000017 6 CH_sbr_115 6 13 0.0000000000067699
Simmondsia chinensis GWHAASQ00000022 6 CH_sci_44 6 8 0.000000000000284301
Simmondsia chinensis GWHAASQ00000004 6 CH_sci_63 5 6 0.0000000000795404
Sechium edule LG03 6 CH_sed_124 4 4 0.0000000191196
Sechium edule LG01 6 CH_sed_150 4 5 0.000000095532
Sechium edule LG07 6 CH_sed_349 3 4 0.0000892664
Sechium edule LG10 6 CH_sed_65 5 5 0.000000000015688
Sequoiadendron giganteum chr7 6 CH_sgi_480 6 8 0.00000000000105233
Sequoiadendron giganteum chr8 6 CH_sgi_83 11 11 1.68963e-29
Solanum lycopersicum SL4.0ch04 6 CH_sly_476 3 3 0.00000915189
Schrenkiella parvula ch5-5 6 CH_spa_23 6 7 0.0000000000000258545
Solanum tuberosum ST4.03ch01 6 CH_stu_19 13 29 6.75987e-31
Selenicereus undatus Scaffold_33678 6 CH_sun_157 3 5 0.0000443193
Trochodendron aralioides group0 6 CH_tar_559 3 4 0.000063223
Theobroma cacao Chromosome_1 6 CH_tca_161 6 10 0.0000000000445812
Theobroma cacao Chromosome_4 6 CH_tca_186 5 5 0.000000000161745
Tarenaya hassleriana NW_010960187.1 6 CH_tha_12 8 10 3.57111e-19
Tarenaya hassleriana NW_010961290.1 6 CH_tha_157 5 33 0.00000408322
Tarenaya hassleriana NW_010966177.1 6 CH_tha_86 4 4 0.0000000209332
Tripterygium wilfordii NC_052246.1 6 CH_twi_221 4 7 0.000001199
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_308 3 3 0.00000370452
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_359 3 4 0.0000148122
Vigna mungo CM024070.1 6 CH_vmu_121 4 5 0.00000000962791
Vanilla planifolia CM028158.1 6 CH_vpl_256 3 7 0.00000572986
Vitis vinifera chr1 6 CH_vvi_116 6 6 0.000000000000219969
Vitis vinifera chr4 6 CH_vvi_20 13 15 7.20775e-32
Vitis vinifera chr3 6 CH_vvi_538 3 3 0.0000857455
Vitis vinifera chr4 6 CH_vvi_539 3 3 0.0000857455
Zea mays 5 6 CH_zma_162 4 8 0.0000000510403
Zea mays 9 6 CH_zma_228 3 3 0.00000219616
Zea mays 4 6 CH_zma_99 4 4 0.000000000729938

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001