Functional clusters
Information
- Type InterPro
- Description Retrotransposon gag domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Cicer arietinum L. | Ca_LG7_v3 | 5 | CH_car_193 | 10 | 77 | 0.0000736946 |
| Citrullus lanatus | CG_Chr03 | 5 | CH_cla_259 | 5 | 38 | 0.000213998 |
| Durio zibethinus | NW_019168159.1 | 5 | CH_dzi_235 | 4 | 8 | 0.000000656575 |
| Lupinus albus | Lalb_Chr23 | 5 | CH_lal_428 | 4 | 43 | 0.0000530859 |
| Malus domestica | Chr02 | 5 | CH_mdo_602 | 3 | 3 | 0.0000014668 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_456 | 4 | 6 | 0.000144899 |
| Solanum pennellii | Spenn-ch04 | 5 | CH_spe_147 | 30 | 66 | 0.000000000262696 |
| Solanum pennellii | Spenn-ch10 | 5 | CH_spe_175 | 30 | 69 | 0.00000000115311 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_246 | 27 | 63 | 0.0000000342321 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_273 | 30 | 79 | 0.0000000830611 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_287 | 30 | 80 | 0.000000121594 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_292 | 28 | 71 | 0.000000152606 |
| Solanum pennellii | Spenn-ch07 | 5 | CH_spe_308 | 29 | 77 | 0.000000246488 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_322 | 24 | 55 | 0.000000397936 |
| Solanum pennellii | Spenn-ch07 | 5 | CH_spe_323 | 26 | 64 | 0.000000400737 |
| Solanum pennellii | Spenn-ch07 | 5 | CH_spe_343 | 27 | 70 | 0.000000684792 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_347 | 20 | 40 | 0.000000966261 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_395 | 28 | 79 | 0.00000307587 |
| Solanum pennellii | Spenn-ch07 | 5 | CH_spe_396 | 27 | 74 | 0.00000309985 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_413 | 28 | 80 | 0.0000043308 |
| Solanum pennellii | Spenn-ch08 | 5 | CH_spe_414 | 28 | 80 | 0.0000043308 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_448 | 27 | 77 | 0.00000887106 |
| Solanum pennellii | Spenn-ch04 | 5 | CH_spe_450 | 22 | 53 | 0.00000956028 |
| Solanum pennellii | Spenn-ch07 | 5 | CH_spe_463 | 21 | 49 | 0.000011945 |
| Solanum pennellii | Spenn-ch06 | 5 | CH_spe_466 | 27 | 78 | 0.0000124185 |
| Solanum pennellii | Spenn-ch08 | 5 | CH_spe_497 | 26 | 75 | 0.0000254698 |
| Solanum pennellii | Spenn-ch08 | 5 | CH_spe_600 | 25 | 74 | 0.000100621 |
| Solanum pennellii | Spenn-ch10 | 5 | CH_spe_613 | 26 | 80 | 0.000124495 |
| Solanum pennellii | Spenn-ch07 | 5 | CH_spe_614 | 26 | 80 | 0.000124495 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_668 | 25 | 75 | 0.000138194 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_675 | 25 | 76 | 0.000188558 |
| Solanum pennellii | Spenn-ch04 | 5 | CH_spe_686 | 23 | 66 | 0.000220372 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_753 | 18 | 43 | 0.000355767 |
| Solanum pennellii | Spenn-ch10 | 5 | CH_spe_815 | 25 | 79 | 0.000461496 |
| Solanum pennellii | Spenn-ch10 | 5 | CH_spe_828 | 25 | 80 | 0.000614663 |
| Solanum pennellii | Spenn-ch04 | 5 | CH_spe_829 | 25 | 80 | 0.000614663 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_919 | 24 | 76 | 0.000946902 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_920 | 24 | 76 | 0.000946902 |
| Selenicereus undatus | Scaffold_33673 | 5 | CH_sun_161 | 3 | 3 | 0.0000565512 |
| Cicer arietinum L. | Ca_LG7_v3 | 6 | CH_car_193 | 10 | 77 | 0.0000736946 |
| Citrullus lanatus | CG_Chr03 | 6 | CH_cla_259 | 5 | 38 | 0.000213998 |
| Durio zibethinus | NW_019168159.1 | 6 | CH_dzi_235 | 4 | 8 | 0.000000656575 |
| Lupinus albus | Lalb_Chr23 | 6 | CH_lal_428 | 4 | 43 | 0.0000530859 |
| Malus domestica | Chr02 | 6 | CH_mdo_602 | 3 | 3 | 0.0000014668 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_456 | 4 | 6 | 0.000144899 |
| Solanum pennellii | Spenn-ch04 | 6 | CH_spe_147 | 30 | 66 | 0.000000000262696 |
| Solanum pennellii | Spenn-ch10 | 6 | CH_spe_175 | 30 | 69 | 0.00000000115311 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_246 | 27 | 63 | 0.0000000342321 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_273 | 30 | 79 | 0.0000000830611 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_287 | 30 | 80 | 0.000000121594 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_292 | 28 | 71 | 0.000000152606 |
| Solanum pennellii | Spenn-ch07 | 6 | CH_spe_308 | 29 | 77 | 0.000000246488 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_322 | 24 | 55 | 0.000000397936 |
| Solanum pennellii | Spenn-ch07 | 6 | CH_spe_323 | 26 | 64 | 0.000000400737 |
| Solanum pennellii | Spenn-ch07 | 6 | CH_spe_343 | 27 | 70 | 0.000000684792 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_347 | 20 | 40 | 0.000000966261 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_395 | 28 | 79 | 0.00000307587 |
| Solanum pennellii | Spenn-ch07 | 6 | CH_spe_396 | 27 | 74 | 0.00000309985 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_413 | 28 | 80 | 0.0000043308 |
| Solanum pennellii | Spenn-ch08 | 6 | CH_spe_414 | 28 | 80 | 0.0000043308 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_448 | 27 | 77 | 0.00000887106 |
| Solanum pennellii | Spenn-ch04 | 6 | CH_spe_450 | 22 | 53 | 0.00000956028 |
| Solanum pennellii | Spenn-ch07 | 6 | CH_spe_463 | 21 | 49 | 0.000011945 |
| Solanum pennellii | Spenn-ch06 | 6 | CH_spe_466 | 27 | 78 | 0.0000124185 |
| Solanum pennellii | Spenn-ch08 | 6 | CH_spe_497 | 26 | 75 | 0.0000254698 |
| Solanum pennellii | Spenn-ch08 | 6 | CH_spe_600 | 25 | 74 | 0.000100621 |
| Solanum pennellii | Spenn-ch10 | 6 | CH_spe_613 | 26 | 80 | 0.000124495 |
| Solanum pennellii | Spenn-ch07 | 6 | CH_spe_614 | 26 | 80 | 0.000124495 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_668 | 25 | 75 | 0.000138194 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_675 | 25 | 76 | 0.000188558 |
| Solanum pennellii | Spenn-ch04 | 6 | CH_spe_686 | 23 | 66 | 0.000220372 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_753 | 18 | 43 | 0.000355767 |
| Solanum pennellii | Spenn-ch10 | 6 | CH_spe_815 | 25 | 79 | 0.000461496 |
| Solanum pennellii | Spenn-ch10 | 6 | CH_spe_828 | 25 | 80 | 0.000614663 |
| Solanum pennellii | Spenn-ch04 | 6 | CH_spe_829 | 25 | 80 | 0.000614663 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_919 | 24 | 76 | 0.000946902 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_920 | 24 | 76 | 0.000946902 |
| Selenicereus undatus | Scaffold_33673 | 6 | CH_sun_161 | 3 | 3 | 0.0000565512 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |