Functional clusters
Information
- Type InterPro
- Description Saccharopine dehydrogenase, NADP binding domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-10 | 5 | CH_aar_337 | 2 | 2 | 0.000273698 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 5 | CH_arhy_1049 | 3 | 21 | 0.000214217 |
| Capsicum annuum | PGAv.1.6.scaffold206 | 5 | CH_can_685 | 2 | 2 | 0.000247831 |
| Corylus avellana | 6 | 5 | CH_cav_723 | 2 | 2 | 0.000460017 |
| Chara braunii | BFEA01000484 | 5 | CH_cbr_39 | 4 | 9 | 0.000000000140648 |
| Citrullus lanatus | CG_Chr10 | 5 | CH_cla_338 | 2 | 2 | 0.000532269 |
| Cucumis sativus L. | chr3 | 5 | CH_csa_453 | 2 | 2 | 0.000500856 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 5 | CH_eca_834 | 3 | 55 | 0.000790078 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_499 | 3 | 14 | 0.0000189336 |
| Helianthus annuus | HanXRQChr14 | 5 | CH_han_431 | 3 | 3 | 0.0000000783982 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 5 | CH_lsa_419 | 3 | 4 | 0.000000887636 |
| Nelumbo nucifera | chr4 | 5 | CH_nnu_169 | 3 | 3 | 0.0000000348038 |
| Nicotiana tabacum | Nitab4.5_0000565 | 5 | CH_nta_348 | 2 | 3 | 0.000987456 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_729 | 2 | 2 | 0.000782452 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_657 | 3 | 5 | 0.000000476719 |
| Simmondsia chinensis | GWHAASQ00000009 | 5 | CH_sci_453 | 2 | 2 | 0.000510856 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_995 | 3 | 3 | 0.0000000355983 |
| Solanum tuberosum | ST4.03ch02 | 5 | CH_stu_420 | 3 | 7 | 0.00000137837 |
| Selenicereus undatus | Scaffold_33676 | 5 | CH_sun_327 | 2 | 2 | 0.000435983 |
| Trochodendron aralioides | group13 | 5 | CH_tar_339 | 3 | 6 | 0.00000108111 |
| Aethionema arabicum | LG-10 | 6 | CH_aar_337 | 2 | 2 | 0.000273698 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 6 | CH_arhy_1049 | 3 | 21 | 0.000214217 |
| Capsicum annuum | PGAv.1.6.scaffold206 | 6 | CH_can_685 | 2 | 2 | 0.000247831 |
| Corylus avellana | 6 | 6 | CH_cav_723 | 2 | 2 | 0.000460017 |
| Chara braunii | BFEA01000484 | 6 | CH_cbr_39 | 4 | 9 | 0.000000000140648 |
| Citrullus lanatus | CG_Chr10 | 6 | CH_cla_338 | 2 | 2 | 0.000532269 |
| Cucumis melo | chr04 | 6 | CH_cme_415 | 2 | 2 | 0.000400267 |
| Cucumis sativus L. | chr3 | 6 | CH_csa_453 | 2 | 2 | 0.000500856 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 6 | CH_eca_834 | 3 | 55 | 0.000790078 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_499 | 3 | 14 | 0.0000189336 |
| Helianthus annuus | HanXRQChr14 | 6 | CH_han_431 | 3 | 3 | 0.0000000783982 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 6 | CH_lsa_419 | 3 | 4 | 0.000000887636 |
| Nelumbo nucifera | chr4 | 6 | CH_nnu_169 | 3 | 3 | 0.0000000348038 |
| Nicotiana tabacum | Nitab4.5_0000565 | 6 | CH_nta_348 | 2 | 3 | 0.000987456 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_729 | 2 | 2 | 0.000782452 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_657 | 3 | 5 | 0.000000476719 |
| Simmondsia chinensis | GWHAASQ00000009 | 6 | CH_sci_453 | 2 | 2 | 0.000510856 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_995 | 3 | 3 | 0.0000000355983 |
| Solanum tuberosum | ST4.03ch02 | 6 | CH_stu_420 | 3 | 7 | 0.00000137837 |
| Selenicereus undatus | Scaffold_33676 | 6 | CH_sun_327 | 2 | 2 | 0.000435983 |
| Trochodendron aralioides | group13 | 6 | CH_tar_339 | 3 | 6 | 0.00000108111 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |