Functional clusters
Information
- Type InterPro
- Description Pectinacetylesterase/NOTUM
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-1 | 5 | CH_aar_108 | 4 | 4 | 0.00000000414669 |
| Acer truncatum | chr6 | 5 | CH_acertr_439 | 3 | 6 | 0.00000834541 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 5 | CH_arhy_767 | 3 | 3 | 0.0000104466 |
| Camellia sinensis var. sinensis | Chr6 | 5 | CH_camsi_653 | 3 | 3 | 0.00000114808 |
| Citrus clementina | scaffold_5 | 5 | CH_ccl_349 | 3 | 3 | 0.000000565268 |
| Corchorus olitorius | AWUE01016240.1 | 5 | CH_col_210 | 2 | 2 | 0.000876296 |
| Durio zibethinus | NW_019168381.1 | 5 | CH_dzi_628 | 2 | 2 | 0.000973326 |
| Erythranthe guttata | scaffold_1 | 5 | CH_egut_219 | 4 | 4 | 0.00000000693249 |
| Erythranthe guttata | scaffold_14 | 5 | CH_egut_415 | 3 | 3 | 0.0000105778 |
| Erythranthe guttata | scaffold_1 | 5 | CH_egut_96 | 6 | 6 | 0.00000000000000250004 |
| Glycine max | Gm16 | 5 | CH_gma_607 | 3 | 6 | 0.0000993067 |
| Helianthus annuus | HanXRQChr03 | 5 | CH_han_552 | 3 | 3 | 0.00000125437 |
| Lonicera japonica | GWHAAZE00000007 | 5 | CH_lonja_1114 | 3 | 4 | 0.000503538 |
| Lonicera japonica | GWHAAZE00000007 | 5 | CH_lonja_12 | 21 | 37 | 6.95883e-47 |
| Lonicera japonica | GWHAAZE00000008 | 5 | CH_lonja_201 | 6 | 6 | 0.000000000000398029 |
| Lonicera japonica | GWHAAZE00000007 | 5 | CH_lonja_604 | 5 | 21 | 0.00000552487 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_844 | 3 | 3 | 0.00012603 |
| Malus domestica | Chr12 | 5 | CH_mdo_191 | 5 | 7 | 0.0000000000172944 |
| Malus domestica | Chr04 | 5 | CH_mdo_215 | 5 | 8 | 0.0000000000461029 |
| Malus domestica | Chr04 | 5 | CH_mdo_680 | 3 | 3 | 0.00000496124 |
| Manihot esculenta | Chromosome06 | 5 | CH_mes_157 | 5 | 7 | 0.00000000000438242 |
| Manihot esculenta | Chromosome17 | 5 | CH_mes_427 | 3 | 4 | 0.00000814144 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_81 | 6 | 45 | 0.0000000000218394 |
| Nicotiana tabacum | Nitab4.5_0000063 | 5 | CH_nta_2 | 10 | 13 | 9.097e-26 |
| Petunia axillaris | Peaxi162Scf00206 | 5 | CH_pax_102 | 5 | 7 | 0.000000000253569 |
| Petunia axillaris | Peaxi162Scf00045 | 5 | CH_pax_103 | 5 | 7 | 0.000000000253569 |
| Papaver somniferum | NC_039361.1 | 5 | CH_pso_401 | 4 | 7 | 0.0000000210593 |
| Papaver somniferum | NC_039366.1 | 5 | CH_pso_89 | 6 | 6 | 3.86619e-17 |
| Papaver somniferum | NW_020650971.1 | 5 | CH_pso_946 | 3 | 8 | 0.000124579 |
| Quercus lobata | 12 | 5 | CH_qlo_432 | 5 | 11 | 0.00000000000620004 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_700 | 3 | 3 | 0.000000867742 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_930 | 3 | 7 | 0.0000303486 |
| Striga asiatica | scaffold89 | 5 | CH_sas_101 | 3 | 3 | 0.00000780248 |
| Striga asiatica | scaffold146 | 5 | CH_sas_102 | 3 | 3 | 0.00000780248 |
| Salvia bowleyana | GWHASIU00000008 | 5 | CH_sbo_305 | 5 | 22 | 0.000000142567 |
| Salvia bowleyana | GWHASIU00000008 | 5 | CH_sbo_719 | 3 | 7 | 0.000487543 |
| Simmondsia chinensis | GWHAASQ00000013 | 5 | CH_sci_266 | 3 | 12 | 0.0000836043 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_533 | 6 | 39 | 0.00000000000420026 |
| Solanum lycopersicum | SL4.0ch08 | 5 | CH_sly_87 | 7 | 14 | 5.55718e-16 |
| Solanum pennellii | Spenn-ch08 | 5 | CH_spe_500 | 3 | 6 | 0.0000269875 |
| Solanum tuberosum | ST4.03ch08 | 5 | CH_stu_380 | 4 | 12 | 0.000000474551 |
| Tarenaya hassleriana | NW_010960187.1 | 5 | CH_tha_135 | 3 | 3 | 0.0000012075 |
| Aethionema arabicum | LG-1 | 6 | CH_aar_108 | 4 | 4 | 0.00000000414669 |
| Acer truncatum | chr6 | 6 | CH_acertr_439 | 3 | 6 | 0.00000834541 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 6 | CH_arhy_767 | 3 | 3 | 0.0000104466 |
| Camellia sinensis var. sinensis | Chr6 | 6 | CH_camsi_653 | 3 | 3 | 0.00000114808 |
| Citrus clementina | scaffold_5 | 6 | CH_ccl_349 | 3 | 3 | 0.000000565268 |
| Corchorus olitorius | AWUE01016240.1 | 6 | CH_col_210 | 2 | 2 | 0.000876296 |
| Durio zibethinus | NW_019168381.1 | 6 | CH_dzi_628 | 2 | 2 | 0.000973326 |
| Erythranthe guttata | scaffold_1 | 6 | CH_egut_219 | 4 | 4 | 0.00000000693249 |
| Erythranthe guttata | scaffold_14 | 6 | CH_egut_415 | 3 | 3 | 0.0000105778 |
| Erythranthe guttata | scaffold_1 | 6 | CH_egut_96 | 6 | 6 | 0.00000000000000250004 |
| Glycine max | Gm16 | 6 | CH_gma_607 | 3 | 6 | 0.0000993067 |
| Helianthus annuus | HanXRQChr03 | 6 | CH_han_552 | 3 | 3 | 0.00000125437 |
| Lonicera japonica | GWHAAZE00000007 | 6 | CH_lonja_1114 | 3 | 4 | 0.000503538 |
| Lonicera japonica | GWHAAZE00000007 | 6 | CH_lonja_12 | 21 | 37 | 6.95883e-47 |
| Lonicera japonica | GWHAAZE00000008 | 6 | CH_lonja_201 | 6 | 6 | 0.000000000000398029 |
| Lonicera japonica | GWHAAZE00000007 | 6 | CH_lonja_604 | 5 | 21 | 0.00000552487 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_844 | 3 | 3 | 0.00012603 |
| Malus domestica | Chr12 | 6 | CH_mdo_191 | 5 | 7 | 0.0000000000172944 |
| Malus domestica | Chr04 | 6 | CH_mdo_215 | 5 | 8 | 0.0000000000461029 |
| Malus domestica | Chr04 | 6 | CH_mdo_680 | 3 | 3 | 0.00000496124 |
| Manihot esculenta | Chromosome06 | 6 | CH_mes_157 | 5 | 7 | 0.00000000000438242 |
| Manihot esculenta | Chromosome17 | 6 | CH_mes_427 | 3 | 4 | 0.00000814144 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_81 | 6 | 45 | 0.0000000000218394 |
| Nicotiana tabacum | Nitab4.5_0000063 | 6 | CH_nta_2 | 10 | 13 | 9.097e-26 |
| Petunia axillaris | Peaxi162Scf00206 | 6 | CH_pax_102 | 5 | 7 | 0.000000000253569 |
| Petunia axillaris | Peaxi162Scf00045 | 6 | CH_pax_103 | 5 | 7 | 0.000000000253569 |
| Papaver somniferum | NC_039361.1 | 6 | CH_pso_401 | 4 | 7 | 0.0000000210593 |
| Papaver somniferum | NC_039366.1 | 6 | CH_pso_89 | 6 | 6 | 3.86619e-17 |
| Papaver somniferum | NW_020650971.1 | 6 | CH_pso_946 | 3 | 8 | 0.000124579 |
| Quercus lobata | 12 | 6 | CH_qlo_432 | 5 | 11 | 0.00000000000620004 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_700 | 3 | 3 | 0.000000867742 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_930 | 3 | 7 | 0.0000303486 |
| Striga asiatica | scaffold89 | 6 | CH_sas_101 | 3 | 3 | 0.00000780248 |
| Striga asiatica | scaffold146 | 6 | CH_sas_102 | 3 | 3 | 0.00000780248 |
| Salvia bowleyana | GWHASIU00000008 | 6 | CH_sbo_305 | 5 | 22 | 0.000000142567 |
| Salvia bowleyana | GWHASIU00000008 | 6 | CH_sbo_719 | 3 | 7 | 0.000487543 |
| Simmondsia chinensis | GWHAASQ00000013 | 6 | CH_sci_266 | 3 | 12 | 0.0000836043 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_533 | 6 | 39 | 0.00000000000420026 |
| Solanum lycopersicum | SL4.0ch08 | 6 | CH_sly_87 | 7 | 14 | 5.55718e-16 |
| Solanum pennellii | Spenn-ch08 | 6 | CH_spe_500 | 3 | 6 | 0.0000269875 |
| Solanum tuberosum | ST4.03ch08 | 6 | CH_stu_380 | 4 | 12 | 0.000000474551 |
| Tarenaya hassleriana | NW_010960187.1 | 6 | CH_tha_135 | 3 | 3 | 0.0000012075 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |