Functional clusters
Information
- Type InterPro
- Description Late embryogenesis abundant protein, LEA_3 subgroup
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 5 | CH_atr_482 | 2 | 2 | 0.000238322 |
| Capsicum annuum | PGAv.1.6.scaffold1280 | 5 | CH_can_684 | 2 | 2 | 0.000247831 |
| Corylus avellana | 9 | 5 | CH_cav_758 | 3 | 46 | 0.000533864 |
| Carya illinoinensis | Chr01 | 5 | CH_cil_806 | 2 | 2 | 0.000619828 |
| Cucumis sativus L. | chr4 | 5 | CH_csa_491 | 2 | 2 | 0.000834759 |
| Daucus carota | DCARv2_Chr2 | 5 | CH_dca_744 | 2 | 2 | 0.000956663 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 5 | CH_eca_323 | 3 | 4 | 0.000000676485 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_708 | 3 | 3 | 0.000000102767 |
| Helianthus annuus | HanXRQChr15 | 5 | CH_han_224 | 4 | 4 | 0.0000000000218135 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 5 | CH_lsa_184 | 4 | 5 | 0.0000000000712953 |
| Magnolia biondii | Chr18 | 5 | CH_mbi_1136 | 2 | 2 | 0.000485661 |
| Medicago truncatula | chr7 | 5 | CH_mtr_1339 | 2 | 2 | 0.000616295 |
| Papaver somniferum | NC_039360.1 | 5 | CH_pso_554 | 3 | 5 | 0.000000639469 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_157 | 9 | 37 | 5.58986e-23 |
| Trochodendron aralioides | group16 | 5 | CH_tar_53 | 5 | 5 | 0.00000000000000545748 |
| Utricularia gibba | unitig_0 | 5 | CH_ugi_249 | 2 | 2 | 0.000246144 |
| Vanilla planifolia | CM028163.1 | 5 | CH_vpl_534 | 2 | 2 | 0.000221664 |
| Vitis vinifera | chr3 | 5 | CH_vvi_248 | 3 | 3 | 0.0000000347148 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 6 | CH_atr_482 | 2 | 2 | 0.000238322 |
| Capsicum annuum | PGAv.1.6.scaffold1280 | 6 | CH_can_684 | 2 | 2 | 0.000247831 |
| Corylus avellana | 9 | 6 | CH_cav_758 | 3 | 46 | 0.000533864 |
| Carya illinoinensis | Chr01 | 6 | CH_cil_806 | 2 | 2 | 0.000619828 |
| Cucumis sativus L. | chr4 | 6 | CH_csa_491 | 2 | 2 | 0.000834759 |
| Daucus carota | DCARv2_Chr2 | 6 | CH_dca_744 | 2 | 2 | 0.000956663 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 6 | CH_eca_323 | 3 | 4 | 0.000000676485 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_708 | 3 | 3 | 0.000000102767 |
| Helianthus annuus | HanXRQChr15 | 6 | CH_han_224 | 4 | 4 | 0.0000000000218135 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 6 | CH_lsa_184 | 4 | 5 | 0.0000000000712953 |
| Magnolia biondii | Chr18 | 6 | CH_mbi_1136 | 2 | 2 | 0.000485661 |
| Medicago truncatula | chr7 | 6 | CH_mtr_1339 | 2 | 2 | 0.000616295 |
| Papaver somniferum | NC_039360.1 | 6 | CH_pso_554 | 3 | 5 | 0.000000639469 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_157 | 9 | 37 | 5.58986e-23 |
| Trochodendron aralioides | group16 | 6 | CH_tar_53 | 5 | 5 | 0.00000000000000545748 |
| Utricularia gibba | unitig_0 | 6 | CH_ugi_249 | 2 | 2 | 0.000246144 |
| Vanilla planifolia | CM028163.1 | 6 | CH_vpl_534 | 2 | 2 | 0.000221664 |
| Vitis vinifera | chr3 | 6 | CH_vvi_248 | 3 | 3 | 0.0000000347148 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |