Functional clusters

Information

  • Type InterPro
  • Description Gamma interferon inducible lysosomal thiol reductase GILT

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-9 5 CH_aar_386 2 2 0.000547395
Acer truncatum chr8 5 CH_acertr_40 6 9 2.76429e-16
Arabidopsis lyrata scaffold_9 5 CH_aly_125 4 7 0.000000000150954
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 5 CH_amhyb_314 2 2 0.000252525
Aquilegia oxysepala CHR07 5 CH_aox_551 2 2 0.000801989
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 5 CH_arhy_507 3 3 0.000000161337
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 5 CH_arhy_508 3 3 0.000000161337
Arabidopsis thaliana Chr4 5 CH_ath_211 3 4 0.00000009849
Amborella trichopoda AmTr_v1.0_scaffold00153 5 CH_atr_459 2 3 0.000238313
Beta vulgaris Chr7_EL10_PGA_scaffold5 5 CH_bvu_155 3 3 0.0000000411285
Cannabis sativa NC_044378.1 5 CH_cansat_460 2 2 0.000196993
Capsicum annuum PGAv.1.6.scaffold741 5 CH_can_683 2 2 0.000247831
Corylus avellana 10 5 CH_cav_209 3 3 0.0000000352706
Citrus clementina scaffold_6 5 CH_ccl_161 4 4 0.0000000000248428
Carya illinoinensis Chr09 5 CH_cil_669 2 2 0.000185948
Corchorus olitorius AWUE01015427.1 5 CH_col_19 5 5 0.000000000000327878
Carica papaya supercontig_120 5 CH_cpa_658 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_2716 5 CH_cqu_1063 2 2 0.000995025
Chenopodium quinoa C_Quinoa_Scaffold_2493 5 CH_cqu_319 3 3 0.000000117869
Chlamydomonas reinhardtii chromosome_9 5 CH_cre_160 2 2 0.0003412
Capsella rubella scaffold_7 5 CH_cru_167 4 9 0.0000000022154
Cucumis sativus L. chr1 5 CH_csa_399 2 2 0.000250428
Durio zibethinus NW_019167937.1 5 CH_dzi_625 2 2 0.000973326
Durio zibethinus NW_019168492.1 5 CH_dzi_626 2 2 0.000973326
Durio zibethinus NW_019168481.1 5 CH_dzi_627 2 2 0.000973326
Erigeron canadensis Conyza_canadensis_scaffold:7 5 CH_eca_683 2 2 0.000269233
Erigeron canadensis Conyza_canadensis_scaffold:9 5 CH_eca_684 2 2 0.000269233
Fragaria vesca Fvb6 5 CH_fve_252 4 9 0.00000000973087
Fragaria vesca Fvb6 5 CH_fve_494 3 7 0.000015295
Gossypium hirsutum D10 5 CH_ghi_379 5 40 0.00000000500278
Helianthus annuus HanXRQChr01 5 CH_han_1065 2 2 0.000386429
Lupinus albus Lalb_Chr07 5 CH_lal_195 3 3 0.00000014461
Lotus japonicus chr6 5 CH_lja_164 3 3 0.0000000767031
Lotus japonicus chr3 5 CH_lja_600 2 2 0.000715077
Lonicera japonica GWHAAZE00000003 5 CH_lonja_910 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_5 5 CH_lsa_694 2 2 0.000154202
Malus domestica Chr04 5 CH_mdo_218 4 5 0.0000000000572564
Manihot esculenta Chromosome08 5 CH_mes_680 2 2 0.000610631
Medicago truncatula chr3 5 CH_mtr_1338 2 2 0.000616295
Medicago truncatula chr4 5 CH_mtr_258 4 4 0.00000000000312127
Petunia axillaris Peaxi162Scf01132 5 CH_pax_537 2 2 0.000211067
Prunus persica Pp06 5 CH_ppe_308 3 3 0.0000000333888
Pisum sativum chr5LG3 5 CH_psa_226 3 3 0.000000081633
Pisum sativum chr7LG7 5 CH_psa_227 3 3 0.000000081633
Papaver somniferum NC_039358.1 5 CH_pso_437 4 14 0.0000000468242
Papaver somniferum NC_039360.1 5 CH_pso_770 3 8 0.0000193887
Populus trichocarpa Chr16 5 CH_ptr_341 3 3 0.00000028064
Quercus lobata 7 5 CH_qlo_694 3 3 0.0000000159937
Rosa chinensis RcHm_v2.0_Chr3 5 CH_rch_47 11 31 1.06268e-27
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_517 4 8 0.000000040675
Salix brachista GWHAAZH00000016 5 CH_sbr_246 3 4 0.000000095296
Sequoiadendron giganteum chr1 5 CH_sgi_1974 2 3 0.000146142
Solanum lycopersicum SL4.0ch06 5 CH_sly_706 2 2 0.000176082
Schrenkiella parvula ch7-4 5 CH_spa_155 3 6 0.00000185923
Solanum pennellii Spenn-ch06 5 CH_spe_642 2 2 0.000133437
Theobroma cacao Chromosome_5 5 CH_tca_144 4 4 0.00000000000589331
Trifolium pratense Tp57577_TGAC_v2_LG4 5 CH_tpr_191 3 3 0.0000000343818
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_588 2 2 0.000278772
Vigna mungo CM024078.1 5 CH_vmu_198 3 4 0.000000500961
Vigna mungo CM024075.1 5 CH_vmu_632 2 2 0.000969211
Aethionema arabicum LG-9 6 CH_aar_386 2 2 0.000547395
Acer truncatum chr8 6 CH_acertr_40 6 9 2.76429e-16
Arabidopsis lyrata scaffold_9 6 CH_aly_125 4 7 0.000000000150954
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 6 CH_amhyb_314 2 2 0.000252525
Aquilegia oxysepala CHR07 6 CH_aox_551 2 2 0.000801989
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 6 CH_arhy_507 3 3 0.000000161337
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 6 CH_arhy_508 3 3 0.000000161337
Arabidopsis thaliana Chr4 6 CH_ath_211 3 4 0.00000009849
Amborella trichopoda AmTr_v1.0_scaffold00153 6 CH_atr_459 2 3 0.000238313
Beta vulgaris Chr7_EL10_PGA_scaffold5 6 CH_bvu_155 3 3 0.0000000411285
Cannabis sativa NC_044378.1 6 CH_cansat_460 2 2 0.000196993
Capsicum annuum PGAv.1.6.scaffold741 6 CH_can_683 2 2 0.000247831
Corylus avellana 10 6 CH_cav_209 3 3 0.0000000352706
Citrus clementina scaffold_6 6 CH_ccl_161 4 4 0.0000000000248428
Carya illinoinensis Chr09 6 CH_cil_669 2 2 0.000185948
Cucumis melo chr12 6 CH_cme_362 2 2 0.000200133
Corchorus olitorius AWUE01015427.1 6 CH_col_19 5 5 0.000000000000327878
Carica papaya supercontig_120 6 CH_cpa_658 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_2716 6 CH_cqu_1063 2 2 0.000995025
Chenopodium quinoa C_Quinoa_Scaffold_2493 6 CH_cqu_319 3 3 0.000000117869
Chlamydomonas reinhardtii chromosome_9 6 CH_cre_160 2 2 0.0003412
Capsella rubella scaffold_7 6 CH_cru_167 4 9 0.0000000022154
Cucumis sativus L. chr1 6 CH_csa_399 2 2 0.000250428
Durio zibethinus NW_019167937.1 6 CH_dzi_625 2 2 0.000973326
Durio zibethinus NW_019168492.1 6 CH_dzi_626 2 2 0.000973326
Durio zibethinus NW_019168481.1 6 CH_dzi_627 2 2 0.000973326
Erigeron canadensis Conyza_canadensis_scaffold:7 6 CH_eca_683 2 2 0.000269233
Erigeron canadensis Conyza_canadensis_scaffold:9 6 CH_eca_684 2 2 0.000269233
Fragaria x ananassa Fvb6-1 6 CH_fan_310 4 13 0.0000000812354
Fragaria vesca Fvb6 6 CH_fve_252 4 9 0.00000000973087
Fragaria vesca Fvb6 6 CH_fve_494 3 7 0.000015295
Gossypium hirsutum D10 6 CH_ghi_379 5 40 0.00000000500278
Helianthus annuus HanXRQChr01 6 CH_han_1065 2 2 0.000386429
Lupinus albus Lalb_Chr07 6 CH_lal_195 3 3 0.00000014461
Lotus japonicus chr6 6 CH_lja_164 3 3 0.0000000767031
Lotus japonicus chr3 6 CH_lja_600 2 2 0.000715077
Lonicera japonica GWHAAZE00000003 6 CH_lonja_910 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_5 6 CH_lsa_694 2 2 0.000154202
Malus domestica Chr04 6 CH_mdo_218 4 5 0.0000000000572564
Manihot esculenta Chromosome08 6 CH_mes_680 2 2 0.000610631
Medicago truncatula chr3 6 CH_mtr_1338 2 2 0.000616295
Medicago truncatula chr4 6 CH_mtr_258 4 4 0.00000000000312127
Petunia axillaris Peaxi162Scf01132 6 CH_pax_537 2 2 0.000211067
Prunus persica Pp06 6 CH_ppe_308 3 3 0.0000000333888
Pisum sativum chr5LG3 6 CH_psa_226 3 3 0.000000081633
Pisum sativum chr7LG7 6 CH_psa_227 3 3 0.000000081633
Papaver somniferum NC_039358.1 6 CH_pso_437 4 14 0.0000000468242
Papaver somniferum NC_039360.1 6 CH_pso_770 3 8 0.0000193887
Populus trichocarpa Chr16 6 CH_ptr_341 3 3 0.00000028064
Quercus lobata 7 6 CH_qlo_694 3 3 0.0000000159937
Rosa chinensis RcHm_v2.0_Chr3 6 CH_rch_47 11 31 1.06268e-27
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_517 4 8 0.000000040675
Salix brachista GWHAAZH00000016 6 CH_sbr_246 3 4 0.000000095296
Sequoiadendron giganteum chr1 6 CH_sgi_1974 2 3 0.000146142
Solanum lycopersicum SL4.0ch06 6 CH_sly_706 2 2 0.000176082
Schrenkiella parvula ch7-4 6 CH_spa_155 3 6 0.00000185923
Solanum pennellii Spenn-ch06 6 CH_spe_642 2 2 0.000133437
Theobroma cacao Chromosome_5 6 CH_tca_144 4 4 0.00000000000589331
Trifolium pratense Tp57577_TGAC_v2_LG4 6 CH_tpr_191 3 3 0.0000000343818
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_588 2 2 0.000278772
Vigna mungo CM024078.1 6 CH_vmu_198 3 4 0.000000500961
Vigna mungo CM024075.1 6 CH_vmu_632 2 2 0.000969211

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001