Functional clusters
Information
- Type InterPro
- Description Gamma interferon inducible lysosomal thiol reductase GILT
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-9 | 5 | CH_aar_386 | 2 | 2 | 0.000547395 |
| Acer truncatum | chr8 | 5 | CH_acertr_40 | 6 | 9 | 2.76429e-16 |
| Arabidopsis lyrata | scaffold_9 | 5 | CH_aly_125 | 4 | 7 | 0.000000000150954 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_8 | 5 | CH_amhyb_314 | 2 | 2 | 0.000252525 |
| Aquilegia oxysepala | CHR07 | 5 | CH_aox_551 | 2 | 2 | 0.000801989 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 5 | CH_arhy_507 | 3 | 3 | 0.000000161337 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 5 | CH_arhy_508 | 3 | 3 | 0.000000161337 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_211 | 3 | 4 | 0.00000009849 |
| Amborella trichopoda | AmTr_v1.0_scaffold00153 | 5 | CH_atr_459 | 2 | 3 | 0.000238313 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 5 | CH_bvu_155 | 3 | 3 | 0.0000000411285 |
| Cannabis sativa | NC_044378.1 | 5 | CH_cansat_460 | 2 | 2 | 0.000196993 |
| Capsicum annuum | PGAv.1.6.scaffold741 | 5 | CH_can_683 | 2 | 2 | 0.000247831 |
| Corylus avellana | 10 | 5 | CH_cav_209 | 3 | 3 | 0.0000000352706 |
| Citrus clementina | scaffold_6 | 5 | CH_ccl_161 | 4 | 4 | 0.0000000000248428 |
| Carya illinoinensis | Chr09 | 5 | CH_cil_669 | 2 | 2 | 0.000185948 |
| Corchorus olitorius | AWUE01015427.1 | 5 | CH_col_19 | 5 | 5 | 0.000000000000327878 |
| Carica papaya | supercontig_120 | 5 | CH_cpa_658 | 2 | 2 | 0.000950661 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2716 | 5 | CH_cqu_1063 | 2 | 2 | 0.000995025 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2493 | 5 | CH_cqu_319 | 3 | 3 | 0.000000117869 |
| Chlamydomonas reinhardtii | chromosome_9 | 5 | CH_cre_160 | 2 | 2 | 0.0003412 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_167 | 4 | 9 | 0.0000000022154 |
| Cucumis sativus L. | chr1 | 5 | CH_csa_399 | 2 | 2 | 0.000250428 |
| Durio zibethinus | NW_019167937.1 | 5 | CH_dzi_625 | 2 | 2 | 0.000973326 |
| Durio zibethinus | NW_019168492.1 | 5 | CH_dzi_626 | 2 | 2 | 0.000973326 |
| Durio zibethinus | NW_019168481.1 | 5 | CH_dzi_627 | 2 | 2 | 0.000973326 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 5 | CH_eca_683 | 2 | 2 | 0.000269233 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 5 | CH_eca_684 | 2 | 2 | 0.000269233 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_252 | 4 | 9 | 0.00000000973087 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_494 | 3 | 7 | 0.000015295 |
| Gossypium hirsutum | D10 | 5 | CH_ghi_379 | 5 | 40 | 0.00000000500278 |
| Helianthus annuus | HanXRQChr01 | 5 | CH_han_1065 | 2 | 2 | 0.000386429 |
| Lupinus albus | Lalb_Chr07 | 5 | CH_lal_195 | 3 | 3 | 0.00000014461 |
| Lotus japonicus | chr6 | 5 | CH_lja_164 | 3 | 3 | 0.0000000767031 |
| Lotus japonicus | chr3 | 5 | CH_lja_600 | 2 | 2 | 0.000715077 |
| Lonicera japonica | GWHAAZE00000003 | 5 | CH_lonja_910 | 2 | 2 | 0.000179662 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_694 | 2 | 2 | 0.000154202 |
| Malus domestica | Chr04 | 5 | CH_mdo_218 | 4 | 5 | 0.0000000000572564 |
| Manihot esculenta | Chromosome08 | 5 | CH_mes_680 | 2 | 2 | 0.000610631 |
| Medicago truncatula | chr3 | 5 | CH_mtr_1338 | 2 | 2 | 0.000616295 |
| Medicago truncatula | chr4 | 5 | CH_mtr_258 | 4 | 4 | 0.00000000000312127 |
| Petunia axillaris | Peaxi162Scf01132 | 5 | CH_pax_537 | 2 | 2 | 0.000211067 |
| Prunus persica | Pp06 | 5 | CH_ppe_308 | 3 | 3 | 0.0000000333888 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_226 | 3 | 3 | 0.000000081633 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_227 | 3 | 3 | 0.000000081633 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_437 | 4 | 14 | 0.0000000468242 |
| Papaver somniferum | NC_039360.1 | 5 | CH_pso_770 | 3 | 8 | 0.0000193887 |
| Populus trichocarpa | Chr16 | 5 | CH_ptr_341 | 3 | 3 | 0.00000028064 |
| Quercus lobata | 7 | 5 | CH_qlo_694 | 3 | 3 | 0.0000000159937 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_47 | 11 | 31 | 1.06268e-27 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_517 | 4 | 8 | 0.000000040675 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_246 | 3 | 4 | 0.000000095296 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1974 | 2 | 3 | 0.000146142 |
| Solanum lycopersicum | SL4.0ch06 | 5 | CH_sly_706 | 2 | 2 | 0.000176082 |
| Schrenkiella parvula | ch7-4 | 5 | CH_spa_155 | 3 | 6 | 0.00000185923 |
| Solanum pennellii | Spenn-ch06 | 5 | CH_spe_642 | 2 | 2 | 0.000133437 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_144 | 4 | 4 | 0.00000000000589331 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 5 | CH_tpr_191 | 3 | 3 | 0.0000000343818 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_588 | 2 | 2 | 0.000278772 |
| Vigna mungo | CM024078.1 | 5 | CH_vmu_198 | 3 | 4 | 0.000000500961 |
| Vigna mungo | CM024075.1 | 5 | CH_vmu_632 | 2 | 2 | 0.000969211 |
| Aethionema arabicum | LG-9 | 6 | CH_aar_386 | 2 | 2 | 0.000547395 |
| Acer truncatum | chr8 | 6 | CH_acertr_40 | 6 | 9 | 2.76429e-16 |
| Arabidopsis lyrata | scaffold_9 | 6 | CH_aly_125 | 4 | 7 | 0.000000000150954 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_8 | 6 | CH_amhyb_314 | 2 | 2 | 0.000252525 |
| Aquilegia oxysepala | CHR07 | 6 | CH_aox_551 | 2 | 2 | 0.000801989 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 6 | CH_arhy_507 | 3 | 3 | 0.000000161337 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 6 | CH_arhy_508 | 3 | 3 | 0.000000161337 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_211 | 3 | 4 | 0.00000009849 |
| Amborella trichopoda | AmTr_v1.0_scaffold00153 | 6 | CH_atr_459 | 2 | 3 | 0.000238313 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 6 | CH_bvu_155 | 3 | 3 | 0.0000000411285 |
| Cannabis sativa | NC_044378.1 | 6 | CH_cansat_460 | 2 | 2 | 0.000196993 |
| Capsicum annuum | PGAv.1.6.scaffold741 | 6 | CH_can_683 | 2 | 2 | 0.000247831 |
| Corylus avellana | 10 | 6 | CH_cav_209 | 3 | 3 | 0.0000000352706 |
| Citrus clementina | scaffold_6 | 6 | CH_ccl_161 | 4 | 4 | 0.0000000000248428 |
| Carya illinoinensis | Chr09 | 6 | CH_cil_669 | 2 | 2 | 0.000185948 |
| Cucumis melo | chr12 | 6 | CH_cme_362 | 2 | 2 | 0.000200133 |
| Corchorus olitorius | AWUE01015427.1 | 6 | CH_col_19 | 5 | 5 | 0.000000000000327878 |
| Carica papaya | supercontig_120 | 6 | CH_cpa_658 | 2 | 2 | 0.000950661 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2716 | 6 | CH_cqu_1063 | 2 | 2 | 0.000995025 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2493 | 6 | CH_cqu_319 | 3 | 3 | 0.000000117869 |
| Chlamydomonas reinhardtii | chromosome_9 | 6 | CH_cre_160 | 2 | 2 | 0.0003412 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_167 | 4 | 9 | 0.0000000022154 |
| Cucumis sativus L. | chr1 | 6 | CH_csa_399 | 2 | 2 | 0.000250428 |
| Durio zibethinus | NW_019167937.1 | 6 | CH_dzi_625 | 2 | 2 | 0.000973326 |
| Durio zibethinus | NW_019168492.1 | 6 | CH_dzi_626 | 2 | 2 | 0.000973326 |
| Durio zibethinus | NW_019168481.1 | 6 | CH_dzi_627 | 2 | 2 | 0.000973326 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 6 | CH_eca_683 | 2 | 2 | 0.000269233 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 6 | CH_eca_684 | 2 | 2 | 0.000269233 |
| Fragaria x ananassa | Fvb6-1 | 6 | CH_fan_310 | 4 | 13 | 0.0000000812354 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_252 | 4 | 9 | 0.00000000973087 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_494 | 3 | 7 | 0.000015295 |
| Gossypium hirsutum | D10 | 6 | CH_ghi_379 | 5 | 40 | 0.00000000500278 |
| Helianthus annuus | HanXRQChr01 | 6 | CH_han_1065 | 2 | 2 | 0.000386429 |
| Lupinus albus | Lalb_Chr07 | 6 | CH_lal_195 | 3 | 3 | 0.00000014461 |
| Lotus japonicus | chr6 | 6 | CH_lja_164 | 3 | 3 | 0.0000000767031 |
| Lotus japonicus | chr3 | 6 | CH_lja_600 | 2 | 2 | 0.000715077 |
| Lonicera japonica | GWHAAZE00000003 | 6 | CH_lonja_910 | 2 | 2 | 0.000179662 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_694 | 2 | 2 | 0.000154202 |
| Malus domestica | Chr04 | 6 | CH_mdo_218 | 4 | 5 | 0.0000000000572564 |
| Manihot esculenta | Chromosome08 | 6 | CH_mes_680 | 2 | 2 | 0.000610631 |
| Medicago truncatula | chr3 | 6 | CH_mtr_1338 | 2 | 2 | 0.000616295 |
| Medicago truncatula | chr4 | 6 | CH_mtr_258 | 4 | 4 | 0.00000000000312127 |
| Petunia axillaris | Peaxi162Scf01132 | 6 | CH_pax_537 | 2 | 2 | 0.000211067 |
| Prunus persica | Pp06 | 6 | CH_ppe_308 | 3 | 3 | 0.0000000333888 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_226 | 3 | 3 | 0.000000081633 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_227 | 3 | 3 | 0.000000081633 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_437 | 4 | 14 | 0.0000000468242 |
| Papaver somniferum | NC_039360.1 | 6 | CH_pso_770 | 3 | 8 | 0.0000193887 |
| Populus trichocarpa | Chr16 | 6 | CH_ptr_341 | 3 | 3 | 0.00000028064 |
| Quercus lobata | 7 | 6 | CH_qlo_694 | 3 | 3 | 0.0000000159937 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_47 | 11 | 31 | 1.06268e-27 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_517 | 4 | 8 | 0.000000040675 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_246 | 3 | 4 | 0.000000095296 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1974 | 2 | 3 | 0.000146142 |
| Solanum lycopersicum | SL4.0ch06 | 6 | CH_sly_706 | 2 | 2 | 0.000176082 |
| Schrenkiella parvula | ch7-4 | 6 | CH_spa_155 | 3 | 6 | 0.00000185923 |
| Solanum pennellii | Spenn-ch06 | 6 | CH_spe_642 | 2 | 2 | 0.000133437 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_144 | 4 | 4 | 0.00000000000589331 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 6 | CH_tpr_191 | 3 | 3 | 0.0000000343818 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_588 | 2 | 2 | 0.000278772 |
| Vigna mungo | CM024078.1 | 6 | CH_vmu_198 | 3 | 4 | 0.000000500961 |
| Vigna mungo | CM024075.1 | 6 | CH_vmu_632 | 2 | 2 | 0.000969211 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |