Functional clusters
Information
- Type InterPro
- Description Prenylated rab acceptor PRA1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 5 | CH_aag_363 | 2 | 2 | 0.000802568 |
| Actinidia chinensis | Lachesis_group19 | 5 | CH_ach_105 | 4 | 7 | 0.000000100619 |
| Brassica carinata | ChrC09 | 5 | CH_bca_1166 | 3 | 3 | 0.0000259231 |
| Brassica carinata | ChrB05 | 5 | CH_bca_1625 | 3 | 5 | 0.000258981 |
| Brassica carinata | ChrB04 | 5 | CH_bca_426 | 4 | 4 | 0.0000000163476 |
| Brassica napus | A01 | 5 | CH_bna_880 | 3 | 3 | 0.0000236491 |
| Brassica napus | C01 | 5 | CH_bna_881 | 3 | 3 | 0.0000236491 |
| Brassica oleracea | C1 | 5 | CH_bol_427 | 3 | 3 | 0.0000087438 |
| Brassica rapa | A01 | 5 | CH_bra_302 | 3 | 3 | 0.000016544 |
| Citrus clementina | scaffold_1 | 5 | CH_ccl_395 | 3 | 3 | 0.00000222069 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_549 | 4 | 5 | 0.00000000214986 |
| Manihot esculenta | Chromosome10 | 5 | CH_mes_104 | 7 | 16 | 0.00000000000000793778 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_333 | 3 | 4 | 0.0000158653 |
| Nelumbo nucifera | chr6 | 5 | CH_nnu_405 | 3 | 6 | 0.0000792737 |
| Phaseolus vulgaris | Chr08 | 5 | CH_pvu_374 | 3 | 4 | 0.0000147323 |
| Anthoceros agrestis | Sc2ySwM_228 | 6 | CH_aag_363 | 2 | 2 | 0.000802568 |
| Actinidia chinensis | Lachesis_group19 | 6 | CH_ach_105 | 4 | 7 | 0.000000100619 |
| Brassica carinata | ChrC09 | 6 | CH_bca_1166 | 3 | 3 | 0.0000259231 |
| Brassica carinata | ChrB05 | 6 | CH_bca_1625 | 3 | 5 | 0.000258981 |
| Brassica carinata | ChrB04 | 6 | CH_bca_426 | 4 | 4 | 0.0000000163476 |
| Brassica napus | A01 | 6 | CH_bna_880 | 3 | 3 | 0.0000236491 |
| Brassica napus | C01 | 6 | CH_bna_881 | 3 | 3 | 0.0000236491 |
| Brassica oleracea | C1 | 6 | CH_bol_427 | 3 | 3 | 0.0000087438 |
| Brassica rapa | A01 | 6 | CH_bra_302 | 3 | 3 | 0.000016544 |
| Citrus clementina | scaffold_1 | 6 | CH_ccl_395 | 3 | 3 | 0.00000222069 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_549 | 4 | 5 | 0.00000000214986 |
| Manihot esculenta | Chromosome10 | 6 | CH_mes_104 | 7 | 16 | 0.00000000000000793778 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_333 | 3 | 4 | 0.0000158653 |
| Nelumbo nucifera | chr6 | 6 | CH_nnu_405 | 3 | 6 | 0.0000792737 |
| Phaseolus vulgaris | Chr08 | 6 | CH_pvu_374 | 3 | 4 | 0.0000147323 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |