Functional clusters
Information
- Type InterPro
- Description Lateral organ boundaries, LOB
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 5 | CH_arhy_516 | 5 | 12 | 0.000000185592 |
| Brassica carinata | ChrB02 | 5 | CH_bca_1623 | 3 | 3 | 0.000256805 |
| Brassica napus | C07 | 5 | CH_bna_313 | 5 | 6 | 0.00000000315675 |
| Brassica napus | A07 | 5 | CH_bna_513 | 4 | 4 | 0.000000388713 |
| Camellia sinensis var. sinensis | Chr3 | 5 | CH_camsi_713 | 4 | 7 | 0.0000029565 |
| Camellia sinensis var. sinensis | Chr13 | 5 | CH_camsi_876 | 4 | 11 | 0.000027773 |
| Cannabis sativa | NC_044373.1 | 5 | CH_cansat_477 | 3 | 4 | 0.000200847 |
| Corylus avellana | 11 | 5 | CH_cav_382 | 4 | 10 | 0.00000888847 |
| Coffea canephora | chr9 | 5 | CH_ccan_573 | 3 | 24 | 0.000272859 |
| Citrus clementina | scaffold_4 | 5 | CH_ccl_504 | 3 | 3 | 0.0000784309 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_169 | 5 | 9 | 0.00000000526548 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3674 | 5 | CH_cqu_684 | 3 | 3 | 0.0000788913 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_483 | 3 | 3 | 0.000113791 |
| Daucus carota | DCARv2_Chr5 | 5 | CH_dca_88 | 6 | 8 | 0.0000000000135034 |
| Erythranthe guttata | scaffold_10 | 5 | CH_egut_21 | 14 | 14 | 6.45386e-34 |
| Erythranthe guttata | scaffold_11 | 5 | CH_egut_329 | 4 | 4 | 0.000000689965 |
| Erythranthe guttata | scaffold_5 | 5 | CH_egut_629 | 3 | 3 | 0.000315831 |
| Eutrema salsugineum | scaffold_1 | 5 | CH_esa_256 | 4 | 6 | 0.00000840328 |
| Eutrema salsugineum | scaffold_15 | 5 | CH_esa_4 | 15 | 15 | 5.25385e-37 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_595 | 3 | 4 | 0.000136187 |
| Gossypium hirsutum | A08 | 5 | CH_ghi_1157 | 3 | 3 | 0.000409936 |
| Gossypium hirsutum | D08 | 5 | CH_ghi_1158 | 3 | 3 | 0.000409936 |
| Gossypium raimondii | Chr04 | 5 | CH_gra_539 | 3 | 3 | 0.000216064 |
| Lonicera japonica | GWHAAZE00000007 | 5 | CH_lonja_970 | 4 | 17 | 0.000205544 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_733 | 3 | 4 | 0.00022476 |
| Malus domestica | Chr05 | 5 | CH_mdo_915 | 3 | 3 | 0.000113017 |
| Manihot esculenta | Chromosome07 | 5 | CH_mes_549 | 3 | 3 | 0.000155044 |
| Medicago truncatula | chr8 | 5 | CH_mtr_1231 | 3 | 4 | 0.000364199 |
| Medicago truncatula | chr6 | 5 | CH_mtr_1451 | 3 | 5 | 0.000909666 |
| Petunia axillaris | Peaxi162Scf00047 | 5 | CH_pax_673 | 3 | 4 | 0.000581388 |
| Prunus persica | Pp08 | 5 | CH_ppe_635 | 3 | 3 | 0.000095826 |
| Papaver somniferum | NC_039367.1 | 5 | CH_pso_157 | 7 | 14 | 0.0000000000000845889 |
| Papaver somniferum | NW_020619603.1 | 5 | CH_pso_243 | 5 | 5 | 0.0000000000381791 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_491 | 5 | 16 | 0.00000016551 |
| Papaver somniferum | NC_039366.1 | 5 | CH_pso_788 | 4 | 12 | 0.0000228586 |
| Quercus lobata | 6 | 5 | CH_qlo_1329 | 3 | 3 | 0.000078369 |
| Quercus lobata | 5 | 5 | CH_qlo_237 | 9 | 21 | 5.21199e-17 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_908 | 3 | 3 | 0.0000201106 |
| Rhododendron simsii | chr06 | 5 | CH_rsi_262 | 5 | 5 | 0.000000000275609 |
| Salvia bowleyana | GWHASIU00000001 | 5 | CH_sbo_796 | 3 | 5 | 0.00095629 |
| Salix brachista | GWHAAZH00000007 | 5 | CH_sbr_503 | 3 | 3 | 0.00012404 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_1507 | 4 | 5 | 0.0000202689 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_154 | 12 | 16 | 4.90547e-23 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_36 | 20 | 29 | 1.04725e-39 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_366 | 8 | 10 | 0.0000000000000158875 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_609 | 6 | 6 | 0.0000000000385891 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_678 | 6 | 7 | 0.000000000269412 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_732 | 6 | 8 | 0.00000000107481 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_756 | 6 | 9 | 0.00000000321593 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_76 | 15 | 19 | 2.48277e-30 |
| Solanum lycopersicum | SL4.0ch09 | 5 | CH_sly_659 | 3 | 3 | 0.000128178 |
| Solanum lycopersicum | SL4.0ch09 | 5 | CH_sly_88 | 7 | 7 | 5.70462e-16 |
| Trochodendron aralioides | group4 | 5 | CH_tar_171 | 5 | 7 | 0.00000000710125 |
| Utricularia gibba | unitig_52 | 5 | CH_ugi_22 | 5 | 5 | 0.000000000369208 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_399 | 3 | 3 | 0.0000642462 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_64 | 6 | 6 | 0.000000000000141332 |
| Vitis vinifera | chr13 | 5 | CH_vvi_48 | 9 | 10 | 1.12574e-20 |
| Vitis vinifera | chr7 | 5 | CH_vvi_552 | 3 | 3 | 0.000114941 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 6 | CH_arhy_516 | 5 | 12 | 0.000000185592 |
| Brassica carinata | ChrB02 | 6 | CH_bca_1623 | 3 | 3 | 0.000256805 |
| Brassica napus | C07 | 6 | CH_bna_313 | 5 | 6 | 0.00000000315675 |
| Brassica napus | A07 | 6 | CH_bna_513 | 4 | 4 | 0.000000388713 |
| Camellia sinensis var. sinensis | Chr3 | 6 | CH_camsi_713 | 4 | 7 | 0.0000029565 |
| Camellia sinensis var. sinensis | Chr13 | 6 | CH_camsi_876 | 4 | 11 | 0.000027773 |
| Cannabis sativa | NC_044373.1 | 6 | CH_cansat_477 | 3 | 4 | 0.000200847 |
| Corylus avellana | 11 | 6 | CH_cav_382 | 4 | 10 | 0.00000888847 |
| Coffea canephora | chr9 | 6 | CH_ccan_573 | 3 | 24 | 0.000272859 |
| Citrus clementina | scaffold_4 | 6 | CH_ccl_504 | 3 | 3 | 0.0000784309 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_169 | 5 | 9 | 0.00000000526548 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3674 | 6 | CH_cqu_684 | 3 | 3 | 0.0000788913 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_483 | 3 | 3 | 0.000113791 |
| Daucus carota | DCARv2_Chr5 | 6 | CH_dca_88 | 6 | 8 | 0.0000000000135034 |
| Erythranthe guttata | scaffold_10 | 6 | CH_egut_21 | 14 | 14 | 6.45386e-34 |
| Erythranthe guttata | scaffold_11 | 6 | CH_egut_329 | 4 | 4 | 0.000000689965 |
| Erythranthe guttata | scaffold_5 | 6 | CH_egut_629 | 3 | 3 | 0.000315831 |
| Eutrema salsugineum | scaffold_1 | 6 | CH_esa_256 | 4 | 6 | 0.00000840328 |
| Eutrema salsugineum | scaffold_15 | 6 | CH_esa_4 | 15 | 15 | 5.25385e-37 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_595 | 3 | 4 | 0.000136187 |
| Gossypium hirsutum | A08 | 6 | CH_ghi_1157 | 3 | 3 | 0.000409936 |
| Gossypium hirsutum | D08 | 6 | CH_ghi_1158 | 3 | 3 | 0.000409936 |
| Gossypium raimondii | Chr04 | 6 | CH_gra_539 | 3 | 3 | 0.000216064 |
| Lonicera japonica | GWHAAZE00000007 | 6 | CH_lonja_970 | 4 | 17 | 0.000205544 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_733 | 3 | 4 | 0.00022476 |
| Malus domestica | Chr05 | 6 | CH_mdo_915 | 3 | 3 | 0.000113017 |
| Manihot esculenta | Chromosome07 | 6 | CH_mes_549 | 3 | 3 | 0.000155044 |
| Medicago truncatula | chr8 | 6 | CH_mtr_1231 | 3 | 4 | 0.000364199 |
| Medicago truncatula | chr6 | 6 | CH_mtr_1451 | 3 | 5 | 0.000909666 |
| Petunia axillaris | Peaxi162Scf00047 | 6 | CH_pax_673 | 3 | 4 | 0.000581388 |
| Prunus persica | Pp08 | 6 | CH_ppe_635 | 3 | 3 | 0.000095826 |
| Papaver somniferum | NC_039367.1 | 6 | CH_pso_157 | 7 | 14 | 0.0000000000000845889 |
| Papaver somniferum | NW_020619603.1 | 6 | CH_pso_243 | 5 | 5 | 0.0000000000381791 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_491 | 5 | 16 | 0.00000016551 |
| Papaver somniferum | NC_039366.1 | 6 | CH_pso_788 | 4 | 12 | 0.0000228586 |
| Quercus lobata | 6 | 6 | CH_qlo_1329 | 3 | 3 | 0.000078369 |
| Quercus lobata | 5 | 6 | CH_qlo_237 | 9 | 21 | 5.21199e-17 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_908 | 3 | 3 | 0.0000201106 |
| Rhododendron simsii | chr06 | 6 | CH_rsi_262 | 5 | 5 | 0.000000000275609 |
| Salvia bowleyana | GWHASIU00000001 | 6 | CH_sbo_796 | 3 | 5 | 0.00095629 |
| Salix brachista | GWHAAZH00000007 | 6 | CH_sbr_503 | 3 | 3 | 0.00012404 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_1507 | 4 | 5 | 0.0000202689 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_154 | 12 | 16 | 4.90547e-23 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_36 | 20 | 29 | 1.04725e-39 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_366 | 8 | 10 | 0.0000000000000158875 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_609 | 6 | 6 | 0.0000000000385891 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_678 | 6 | 7 | 0.000000000269412 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_732 | 6 | 8 | 0.00000000107481 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_756 | 6 | 9 | 0.00000000321593 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_76 | 15 | 19 | 2.48277e-30 |
| Solanum lycopersicum | SL4.0ch09 | 6 | CH_sly_659 | 3 | 3 | 0.000128178 |
| Solanum lycopersicum | SL4.0ch09 | 6 | CH_sly_88 | 7 | 7 | 5.70462e-16 |
| Trochodendron aralioides | group4 | 6 | CH_tar_171 | 5 | 7 | 0.00000000710125 |
| Utricularia gibba | unitig_52 | 6 | CH_ugi_22 | 5 | 5 | 0.000000000369208 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_399 | 3 | 3 | 0.0000642462 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_64 | 6 | 6 | 0.000000000000141332 |
| Vitis vinifera | chr13 | 6 | CH_vvi_48 | 9 | 10 | 1.12574e-20 |
| Vitis vinifera | chr7 | 6 | CH_vvi_552 | 3 | 3 | 0.000114941 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |