Functional clusters
Information
- Type InterPro
- Description Aminotransferase, class I/classII
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr5 | 5 | CH_acertr_356 | 5 | 17 | 0.000000848008 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 5 | CH_arhy_966 | 3 | 3 | 0.00010632 |
| Brassica napus | C07 | 5 | CH_bna_1246 | 3 | 3 | 0.000302475 |
| Brassica napus | C03 | 5 | CH_bna_161 | 6 | 7 | 0.00000000000559257 |
| Brassica oleracea | C3 | 5 | CH_bol_70 | 7 | 13 | 0.00000000000052032 |
| Camellia sinensis var. sinensis | Chr14 | 5 | CH_camsi_1265 | 4 | 19 | 0.000405818 |
| Capsicum annuum | PGAv.1.6.scaffold209 | 5 | CH_can_170 | 5 | 5 | 0.000000000175373 |
| Davidia involucrata | GWHABJS00000013 | 5 | CH_din_489 | 3 | 3 | 0.0000735386 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_1016 | 3 | 3 | 0.0000366878 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_1380 | 3 | 6 | 0.000732098 |
| Helianthus annuus | HanXRQChr15 | 5 | CH_han_1164 | 3 | 5 | 0.000726976 |
| Medicago truncatula | chr3 | 5 | CH_mtr_875 | 3 | 3 | 0.0000231416 |
| Olea europaea | chr3 | 5 | CH_oeu_166 | 4 | 6 | 0.000000317007 |
| Oryza sativa ssp. japonica | chr01 | 5 | CH_osa_451 | 3 | 3 | 0.0000352946 |
| Papaver somniferum | NC_039364.1 | 5 | CH_pso_330 | 5 | 8 | 0.00000000213363 |
| Papaver somniferum | NC_039367.1 | 5 | CH_pso_331 | 5 | 8 | 0.00000000213363 |
| Populus trichocarpa | Chr07 | 5 | CH_ptr_561 | 3 | 3 | 0.0000812603 |
| Quercus lobata | 4 | 5 | CH_qlo_1313 | 3 | 3 | 0.0000567375 |
| Quercus lobata | 9 | 5 | CH_qlo_1314 | 3 | 3 | 0.0000567375 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_2205 | 3 | 5 | 0.000276242 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_367 | 8 | 27 | 0.0000000000000173716 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_694 | 5 | 7 | 0.000000000386187 |
| Sapria himalayana | scaffold9_16683904 | 5 | CH_shi_194 | 3 | 3 | 0.000001079 |
| Solanum tuberosum | ST4.03ch08 | 5 | CH_stu_567 | 3 | 3 | 0.0000486139 |
| Solanum tuberosum | ST4.03ch07 | 5 | CH_stu_844 | 3 | 5 | 0.000485367 |
| Theobroma cacao | Chromosome_3 | 5 | CH_tca_509 | 3 | 3 | 0.0000574494 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_648 | 3 | 4 | 0.00030969 |
| Acer truncatum | chr5 | 6 | CH_acertr_356 | 5 | 17 | 0.000000848008 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 6 | CH_arhy_966 | 3 | 3 | 0.00010632 |
| Brassica napus | C07 | 6 | CH_bna_1246 | 3 | 3 | 0.000302475 |
| Brassica napus | C03 | 6 | CH_bna_161 | 6 | 7 | 0.00000000000559257 |
| Brassica oleracea | C3 | 6 | CH_bol_70 | 7 | 13 | 0.00000000000052032 |
| Camellia sinensis var. sinensis | Chr14 | 6 | CH_camsi_1265 | 4 | 19 | 0.000405818 |
| Capsicum annuum | PGAv.1.6.scaffold209 | 6 | CH_can_170 | 5 | 5 | 0.000000000175373 |
| Davidia involucrata | GWHABJS00000013 | 6 | CH_din_489 | 3 | 3 | 0.0000735386 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_1016 | 3 | 3 | 0.0000366878 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_1380 | 3 | 6 | 0.000732098 |
| Helianthus annuus | HanXRQChr15 | 6 | CH_han_1164 | 3 | 5 | 0.000726976 |
| Medicago truncatula | chr3 | 6 | CH_mtr_875 | 3 | 3 | 0.0000231416 |
| Olea europaea | chr3 | 6 | CH_oeu_166 | 4 | 6 | 0.000000317007 |
| Oryza sativa ssp. japonica | chr01 | 6 | CH_osa_451 | 3 | 3 | 0.0000352946 |
| Papaver somniferum | NC_039364.1 | 6 | CH_pso_330 | 5 | 8 | 0.00000000213363 |
| Papaver somniferum | NC_039367.1 | 6 | CH_pso_331 | 5 | 8 | 0.00000000213363 |
| Populus trichocarpa | Chr07 | 6 | CH_ptr_561 | 3 | 3 | 0.0000812603 |
| Quercus lobata | 4 | 6 | CH_qlo_1313 | 3 | 3 | 0.0000567375 |
| Quercus lobata | 9 | 6 | CH_qlo_1314 | 3 | 3 | 0.0000567375 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_2205 | 3 | 5 | 0.000276242 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_367 | 8 | 27 | 0.0000000000000173716 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_694 | 5 | 7 | 0.000000000386187 |
| Sapria himalayana | scaffold9_16683904 | 6 | CH_shi_194 | 3 | 3 | 0.000001079 |
| Solanum tuberosum | ST4.03ch08 | 6 | CH_stu_567 | 3 | 3 | 0.0000486139 |
| Solanum tuberosum | ST4.03ch07 | 6 | CH_stu_844 | 3 | 5 | 0.000485367 |
| Theobroma cacao | Chromosome_3 | 6 | CH_tca_509 | 3 | 3 | 0.0000574494 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_648 | 3 | 4 | 0.00030969 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |