Functional clusters
Information
- Type InterPro
- Description Bile acid:sodium symporter
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica rapa | A03 | 5 | CH_bra_91 | 4 | 6 | 0.00000000117478 |
| Camellia sinensis var. sinensis | Chr6 | 5 | CH_camsi_503 | 3 | 3 | 0.000000110392 |
| Corylus avellana | 4 | 5 | CH_cav_457 | 3 | 11 | 0.0000508595 |
| Chara braunii | BFEA01000516 | 5 | CH_cbr_259 | 2 | 2 | 0.000215781 |
| Chlamydomonas reinhardtii | chromosome_10 | 5 | CH_cre_181 | 2 | 2 | 0.0006824 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_772 | 3 | 4 | 0.000000411028 |
| Lotus japonicus | chr2 | 5 | CH_lja_586 | 2 | 2 | 0.000715077 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 5 | CH_lsa_173 | 4 | 4 | 0.0000000000285206 |
| Malus domestica | Chr03 | 5 | CH_mdo_250 | 4 | 4 | 0.000000000223318 |
| Malus domestica | Chr11 | 5 | CH_mdo_816 | 3 | 7 | 0.0000343252 |
| Medicago truncatula | chr2 | 5 | CH_mtr_962 | 3 | 12 | 0.0000467471 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_605 | 2 | 2 | 0.000312981 |
| Pisum sativum | chr2LG1 | 5 | CH_psa_606 | 2 | 2 | 0.000312981 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_1376 | 2 | 2 | 0.000597979 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_2399 | 2 | 2 | 0.000487151 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_332 | 3 | 5 | 0.000000593443 |
| Vigna mungo | CM024079.1 | 5 | CH_vmu_623 | 2 | 2 | 0.000969211 |
| Vitis vinifera | chr19 | 5 | CH_vvi_757 | 2 | 2 | 0.00076063 |
| Brassica rapa | A03 | 6 | CH_bra_91 | 4 | 6 | 0.00000000117478 |
| Camellia sinensis var. sinensis | Chr6 | 6 | CH_camsi_503 | 3 | 3 | 0.000000110392 |
| Corylus avellana | 4 | 6 | CH_cav_457 | 3 | 11 | 0.0000508595 |
| Chara braunii | BFEA01000516 | 6 | CH_cbr_259 | 2 | 2 | 0.000215781 |
| Chlamydomonas reinhardtii | chromosome_10 | 6 | CH_cre_181 | 2 | 2 | 0.0006824 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_772 | 3 | 4 | 0.000000411028 |
| Lotus japonicus | chr2 | 6 | CH_lja_586 | 2 | 2 | 0.000715077 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 6 | CH_lsa_173 | 4 | 4 | 0.0000000000285206 |
| Malus domestica | Chr03 | 6 | CH_mdo_250 | 4 | 4 | 0.000000000223318 |
| Malus domestica | Chr11 | 6 | CH_mdo_816 | 3 | 7 | 0.0000343252 |
| Medicago truncatula | chr2 | 6 | CH_mtr_962 | 3 | 12 | 0.0000467471 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_605 | 2 | 2 | 0.000312981 |
| Pisum sativum | chr2LG1 | 6 | CH_psa_606 | 2 | 2 | 0.000312981 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_1376 | 2 | 2 | 0.000597979 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_2399 | 2 | 2 | 0.000487151 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_332 | 3 | 5 | 0.000000593443 |
| Vigna mungo | CM024079.1 | 6 | CH_vmu_623 | 2 | 2 | 0.000969211 |
| Vitis vinifera | chr19 | 6 | CH_vvi_757 | 2 | 2 | 0.00076063 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |