Functional clusters
Information
- Type InterPro
- Description Zinc/iron permease, fungal/plant
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 5 | CH_aag_359 | 2 | 2 | 0.000802568 |
| Actinidia chinensis | Lachesis_group23 | 5 | CH_ach_218 | 4 | 47 | 0.0000107451 |
| Brassica carinata | Contig606 | 5 | CH_bca_410 | 4 | 5 | 0.0000000133866 |
| Brassica carinata | ChrC06 | 5 | CH_bca_988 | 3 | 3 | 0.0000067721 |
| Brassica napus | C01 | 5 | CH_bna_229 | 5 | 11 | 0.000000000307721 |
| Brassica napus | A03 | 5 | CH_bna_739 | 3 | 3 | 0.00000550917 |
| Brassica napus | C07 | 5 | CH_bna_740 | 3 | 3 | 0.00000550917 |
| Brassica napus | A01 | 5 | CH_bna_82 | 6 | 7 | 0.00000000000000156007 |
| Brassica oleracea | C7 | 5 | CH_bol_437 | 3 | 4 | 0.00000986957 |
| Brassica rapa | A03 | 5 | CH_bra_237 | 3 | 3 | 0.000002256 |
| Camellia sinensis var. sinensis | Chr13 | 5 | CH_camsi_754 | 3 | 5 | 0.00000520252 |
| Camellia sinensis var. sinensis | Chr8 | 5 | CH_camsi_869 | 4 | 51 | 0.0000236861 |
| Corylus avellana | 4 | 5 | CH_cav_166 | 4 | 7 | 0.00000000165579 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3333 | 5 | CH_cqu_231 | 4 | 5 | 0.00000000290354 |
| Eucalyptus grandis | Chr01 | 5 | CH_egr_1019 | 3 | 6 | 0.0000373768 |
| Gossypium hirsutum | D10 | 5 | CH_ghi_405 | 5 | 22 | 0.0000000169725 |
| Helianthus annuus | HanXRQChr15 | 5 | CH_han_747 | 3 | 5 | 0.0000216942 |
| Punica granatum | NC_045127.1 | 5 | CH_pgr_212 | 4 | 10 | 0.0000000877124 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_38 | 6 | 6 | 8.03157e-18 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_172 | 5 | 6 | 0.000000000000235891 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_498 | 5 | 58 | 0.00000017864 |
| Salvia bowleyana | GWHASIU00000005 | 5 | CH_sbo_321 | 3 | 3 | 0.000000260834 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_630 | 4 | 5 | 0.0000000000606942 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_346 | 3 | 3 | 0.000000434082 |
| Schrenkiella parvula | ch2-4 | 5 | CH_spa_175 | 3 | 3 | 0.00000632327 |
| Solanum tuberosum | ST4.03ch07 | 5 | CH_stu_433 | 3 | 4 | 0.00000189052 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_260 | 3 | 3 | 0.00000072536 |
| Anthoceros agrestis | Sc2ySwM_228 | 6 | CH_aag_359 | 2 | 2 | 0.000802568 |
| Actinidia chinensis | Lachesis_group23 | 6 | CH_ach_218 | 4 | 47 | 0.0000107451 |
| Brassica carinata | Contig606 | 6 | CH_bca_410 | 4 | 5 | 0.0000000133866 |
| Brassica carinata | ChrC06 | 6 | CH_bca_988 | 3 | 3 | 0.0000067721 |
| Brassica napus | C01 | 6 | CH_bna_229 | 5 | 11 | 0.000000000307721 |
| Brassica napus | A03 | 6 | CH_bna_739 | 3 | 3 | 0.00000550917 |
| Brassica napus | C07 | 6 | CH_bna_740 | 3 | 3 | 0.00000550917 |
| Brassica napus | A01 | 6 | CH_bna_82 | 6 | 7 | 0.00000000000000156007 |
| Brassica oleracea | C7 | 6 | CH_bol_437 | 3 | 4 | 0.00000986957 |
| Brassica rapa | A03 | 6 | CH_bra_237 | 3 | 3 | 0.000002256 |
| Camellia sinensis var. sinensis | Chr13 | 6 | CH_camsi_754 | 3 | 5 | 0.00000520252 |
| Camellia sinensis var. sinensis | Chr8 | 6 | CH_camsi_869 | 4 | 51 | 0.0000236861 |
| Corylus avellana | 4 | 6 | CH_cav_166 | 4 | 7 | 0.00000000165579 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3333 | 6 | CH_cqu_231 | 4 | 5 | 0.00000000290354 |
| Eucalyptus grandis | Chr01 | 6 | CH_egr_1019 | 3 | 6 | 0.0000373768 |
| Gossypium hirsutum | D10 | 6 | CH_ghi_405 | 5 | 22 | 0.0000000169725 |
| Helianthus annuus | HanXRQChr15 | 6 | CH_han_747 | 3 | 5 | 0.0000216942 |
| Punica granatum | NC_045127.1 | 6 | CH_pgr_212 | 4 | 10 | 0.0000000877124 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_38 | 6 | 6 | 8.03157e-18 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_172 | 5 | 6 | 0.000000000000235891 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_498 | 5 | 58 | 0.00000017864 |
| Salvia bowleyana | GWHASIU00000005 | 6 | CH_sbo_321 | 3 | 3 | 0.000000260834 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_630 | 4 | 5 | 0.0000000000606942 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_346 | 3 | 3 | 0.000000434082 |
| Schrenkiella parvula | ch2-4 | 6 | CH_spa_175 | 3 | 3 | 0.00000632327 |
| Solanum tuberosum | ST4.03ch07 | 6 | CH_stu_433 | 3 | 4 | 0.00000189052 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_260 | 3 | 3 | 0.00000072536 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |