Functional clusters
Information
- Type InterPro
- Description Tetrapeptide transporter, OPT1/isp4
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR06 | 5 | CH_aox_202 | 3 | 3 | 0.00000159195 |
| Camellia sinensis var. sinensis | Chr13 | 5 | CH_camsi_816 | 4 | 36 | 0.0000121101 |
| Coffea canephora | chr0 | 5 | CH_ccan_142 | 4 | 56 | 0.0000000176014 |
| Coffea canephora | chr9 | 5 | CH_ccan_174 | 3 | 6 | 0.0000000897807 |
| Carya illinoinensis | Chr05 | 5 | CH_cil_487 | 3 | 4 | 0.00000659112 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_562 | 4 | 4 | 0.00000000291428 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_921 | 3 | 3 | 0.00000585771 |
| Gossypium hirsutum | A05 | 5 | CH_ghi_547 | 3 | 3 | 0.000000598905 |
| Gossypium hirsutum | D05 | 5 | CH_ghi_548 | 3 | 3 | 0.000000598905 |
| Malus domestica | Chr03 | 5 | CH_mdo_573 | 3 | 3 | 0.000000981464 |
| Medicago truncatula | chr7 | 5 | CH_mtr_641 | 3 | 3 | 0.00000055708 |
| Medicago truncatula | chr5 | 5 | CH_mtr_834 | 3 | 6 | 0.0000111363 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_340 | 3 | 4 | 0.00000743018 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_312 | 4 | 5 | 0.00000000125456 |
| Papaver somniferum | NW_020621047.1 | 5 | CH_pso_344 | 4 | 6 | 0.00000000376303 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_665 | 3 | 3 | 0.000000524459 |
| Salvia bowleyana | GWHASIU00000004 | 5 | CH_sbo_724 | 3 | 39 | 0.000566054 |
| Salix brachista | GWHAAZH00000009 | 5 | CH_sbr_358 | 3 | 4 | 0.00000524029 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_435 | 3 | 7 | 0.0000458189 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_958 | 4 | 12 | 0.0000000216121 |
| Solanum lycopersicum | SL4.0ch04 | 5 | CH_sly_370 | 3 | 4 | 0.000000723385 |
| Vitis vinifera | chr18 | 5 | CH_vvi_350 | 3 | 3 | 0.00000104144 |
| Aquilegia oxysepala | CHR06 | 6 | CH_aox_202 | 3 | 3 | 0.00000159195 |
| Camellia sinensis var. sinensis | Chr13 | 6 | CH_camsi_816 | 4 | 36 | 0.0000121101 |
| Coffea canephora | chr0 | 6 | CH_ccan_142 | 4 | 56 | 0.0000000176014 |
| Coffea canephora | chr9 | 6 | CH_ccan_174 | 3 | 6 | 0.0000000897807 |
| Carya illinoinensis | Chr05 | 6 | CH_cil_487 | 3 | 4 | 0.00000659112 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_562 | 4 | 4 | 0.00000000291428 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_921 | 3 | 3 | 0.00000585771 |
| Gossypium hirsutum | A05 | 6 | CH_ghi_547 | 3 | 3 | 0.000000598905 |
| Gossypium hirsutum | D05 | 6 | CH_ghi_548 | 3 | 3 | 0.000000598905 |
| Malus domestica | Chr03 | 6 | CH_mdo_573 | 3 | 3 | 0.000000981464 |
| Medicago truncatula | chr7 | 6 | CH_mtr_641 | 3 | 3 | 0.00000055708 |
| Medicago truncatula | chr5 | 6 | CH_mtr_834 | 3 | 6 | 0.0000111363 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_340 | 3 | 4 | 0.00000743018 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_312 | 4 | 5 | 0.00000000125456 |
| Papaver somniferum | NW_020621047.1 | 6 | CH_pso_344 | 4 | 6 | 0.00000000376303 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_665 | 3 | 3 | 0.000000524459 |
| Salvia bowleyana | GWHASIU00000004 | 6 | CH_sbo_724 | 3 | 39 | 0.000566054 |
| Salix brachista | GWHAAZH00000009 | 6 | CH_sbr_358 | 3 | 4 | 0.00000524029 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_435 | 3 | 7 | 0.0000458189 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_958 | 4 | 12 | 0.0000000216121 |
| Solanum lycopersicum | SL4.0ch04 | 6 | CH_sly_370 | 3 | 4 | 0.000000723385 |
| Vitis vinifera | chr18 | 6 | CH_vvi_350 | 3 | 3 | 0.00000104144 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |