Functional clusters
Information
- Type InterPro
- Description Hydroxymethylglutaryl-CoA reductase, eukaryotic/archaeal type
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Carya illinoinensis | Chr06 | 5 | CH_cil_737 | 2 | 2 | 0.000371897 |
| Capsella rubella | scaffold_3 | 5 | CH_cru_521 | 2 | 2 | 0.000219346 |
| Daucus carota | DCARv2_Chr5 | 5 | CH_dca_651 | 2 | 3 | 0.000573967 |
| Eucalyptus grandis | Chr07 | 5 | CH_egr_754 | 3 | 3 | 0.000000287747 |
| Gossypium hirsutum | D02 | 5 | CH_ghi_284 | 4 | 4 | 0.000000000135933 |
| Gossypium raimondii | Chr05 | 5 | CH_gra_148 | 4 | 4 | 0.000000000058248 |
| Helianthus annuus | HanXRQChr17 | 5 | CH_han_1116 | 2 | 2 | 0.000579643 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_371 | 3 | 3 | 0.000000221936 |
| Medicago truncatula | chr5 | 5 | CH_mtr_186 | 5 | 6 | 0.000000000000016158 |
| Salvia bowleyana | GWHASIU00000003 | 5 | CH_sbo_785 | 2 | 2 | 0.000955457 |
| Salvia bowleyana | GWHASIU00000003 | 5 | CH_sbo_786 | 2 | 2 | 0.000955457 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_702 | 2 | 2 | 0.000266874 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_226 | 3 | 3 | 0.000000171909 |
| Carya illinoinensis | Chr06 | 6 | CH_cil_737 | 2 | 2 | 0.000371897 |
| Capsella rubella | scaffold_3 | 6 | CH_cru_521 | 2 | 2 | 0.000219346 |
| Daucus carota | DCARv2_Chr5 | 6 | CH_dca_651 | 2 | 3 | 0.000573967 |
| Eucalyptus grandis | Chr07 | 6 | CH_egr_754 | 3 | 3 | 0.000000287747 |
| Fragaria x ananassa | Fvb2-4 | 6 | CH_fan_116 | 5 | 8 | 0.00000000000165607 |
| Fragaria x ananassa | Fvb2-2 | 6 | CH_fan_201 | 4 | 5 | 0.000000000841388 |
| Fragaria x ananassa | Fvb2-1 | 6 | CH_fan_241 | 4 | 7 | 0.00000000588795 |
| Gossypium hirsutum | D02 | 6 | CH_ghi_284 | 4 | 4 | 0.000000000135933 |
| Gossypium raimondii | Chr05 | 6 | CH_gra_148 | 4 | 4 | 0.000000000058248 |
| Helianthus annuus | HanXRQChr17 | 6 | CH_han_1116 | 2 | 2 | 0.000579643 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_371 | 3 | 3 | 0.000000221936 |
| Medicago truncatula | chr5 | 6 | CH_mtr_186 | 5 | 6 | 0.000000000000016158 |
| Salvia bowleyana | GWHASIU00000003 | 6 | CH_sbo_785 | 2 | 2 | 0.000955457 |
| Salvia bowleyana | GWHASIU00000003 | 6 | CH_sbo_786 | 2 | 2 | 0.000955457 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_702 | 2 | 2 | 0.000266874 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_226 | 3 | 3 | 0.000000171909 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |