Functional clusters
Information
- Type InterPro
- Description Translation elongation factor EF1A, eukaryotic/archaeal
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr12 | 5 | CH_acertr_829 | 3 | 26 | 0.00038664 |
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_197 | 3 | 3 | 0.0000000261404 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 5 | CH_amhyb_38 | 4 | 6 | 0.0000000000268399 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_178 | 3 | 4 | 0.0000000196984 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 5 | CH_bvu_94 | 4 | 8 | 0.000000000119169 |
| Citrus clementina | scaffold_8 | 5 | CH_ccl_339 | 3 | 5 | 0.000000403705 |
| Carpinus fangiana | Cfa06 | 5 | CH_cfa_548 | 2 | 2 | 0.000454408 |
| Carya illinoinensis | Chr13 | 5 | CH_cil_309 | 3 | 3 | 0.0000000576299 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2487 | 5 | CH_cqu_104 | 6 | 16 | 0.0000000000000397121 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3966 | 5 | CH_cqu_73 | 6 | 8 | 1.39015e-16 |
| Daucus carota | DCARv2_Chr4 | 5 | CH_dca_235 | 3 | 3 | 0.000000341687 |
| Eutrema salsugineum | scaffold_5 | 5 | CH_esa_192 | 3 | 5 | 0.000000347895 |
| Gossypium hirsutum | D04 | 5 | CH_ghi_600 | 3 | 3 | 0.00000164699 |
| Gossypium hirsutum | A04 | 5 | CH_ghi_684 | 3 | 4 | 0.00000658662 |
| Manihot esculenta | Chromosome15 | 5 | CH_mes_287 | 3 | 3 | 0.000000111865 |
| Manihot esculenta | Chromosome03 | 5 | CH_mes_322 | 3 | 4 | 0.000000447414 |
| Marchantia polymorpha | scaffold_145 | 5 | CH_mpo_44 | 4 | 4 | 0.000000000848827 |
| Oryza sativa ssp. japonica | chr03 | 5 | CH_osa_229 | 3 | 5 | 0.0000000418359 |
| Punica granatum | NC_045134.1 | 5 | CH_pgr_143 | 4 | 6 | 0.000000000665306 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_305 | 3 | 5 | 0.00000295516 |
| Physcomitrium patens | Chr01 | 5 | CH_ppa_12 | 5 | 13 | 0.0000000000076138 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_904 | 3 | 15 | 0.0000761331 |
| Populus trichocarpa | Chr10 | 5 | CH_ptr_241 | 4 | 9 | 0.00000000510682 |
| Populus trichocarpa | Chr08 | 5 | CH_ptr_449 | 3 | 6 | 0.00000561049 |
| Salix brachista | GWHAAZH00000008 | 5 | CH_sbr_656 | 2 | 2 | 0.00063014 |
| Simmondsia chinensis | GWHAASQ00000020 | 5 | CH_sci_195 | 3 | 8 | 0.00000243495 |
| Sapria himalayana | scaffold8_16897533 | 5 | CH_shi_381 | 2 | 3 | 0.000171536 |
| Solanum lycopersicum | SL4.0ch11 | 5 | CH_sly_887 | 2 | 3 | 0.000586941 |
| Solanum tuberosum | ST4.03ch06 | 5 | CH_stu_286 | 4 | 17 | 0.0000000144015 |
| Selenicereus undatus | Scaffold_33673 | 5 | CH_sun_102 | 3 | 4 | 0.00000110869 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_397 | 5 | CH_tpr_757 | 2 | 2 | 0.000756974 |
| Utricularia gibba | unitig_0 | 5 | CH_ugi_20 | 4 | 6 | 0.000000000124272 |
| Acer truncatum | chr12 | 6 | CH_acertr_829 | 3 | 26 | 0.00038664 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_197 | 3 | 3 | 0.0000000261404 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 6 | CH_amhyb_38 | 4 | 6 | 0.0000000000268399 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_178 | 3 | 4 | 0.0000000196984 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 6 | CH_bvu_94 | 4 | 8 | 0.000000000119169 |
| Citrus clementina | scaffold_8 | 6 | CH_ccl_339 | 3 | 5 | 0.000000403705 |
| Carpinus fangiana | Cfa06 | 6 | CH_cfa_548 | 2 | 2 | 0.000454408 |
| Carya illinoinensis | Chr13 | 6 | CH_cil_309 | 3 | 3 | 0.0000000576299 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2487 | 6 | CH_cqu_104 | 6 | 16 | 0.0000000000000397121 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3966 | 6 | CH_cqu_73 | 6 | 8 | 1.39015e-16 |
| Daucus carota | DCARv2_Chr4 | 6 | CH_dca_235 | 3 | 3 | 0.000000341687 |
| Eutrema salsugineum | scaffold_5 | 6 | CH_esa_192 | 3 | 5 | 0.000000347895 |
| Gossypium hirsutum | D04 | 6 | CH_ghi_600 | 3 | 3 | 0.00000164699 |
| Gossypium hirsutum | A04 | 6 | CH_ghi_684 | 3 | 4 | 0.00000658662 |
| Manihot esculenta | Chromosome15 | 6 | CH_mes_287 | 3 | 3 | 0.000000111865 |
| Manihot esculenta | Chromosome03 | 6 | CH_mes_322 | 3 | 4 | 0.000000447414 |
| Marchantia polymorpha | scaffold_145 | 6 | CH_mpo_44 | 4 | 4 | 0.000000000848827 |
| Oryza sativa ssp. japonica | chr03 | 6 | CH_osa_229 | 3 | 5 | 0.0000000418359 |
| Punica granatum | NC_045134.1 | 6 | CH_pgr_143 | 4 | 6 | 0.000000000665306 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_305 | 3 | 5 | 0.00000295516 |
| Physcomitrium patens | Chr01 | 6 | CH_ppa_12 | 5 | 13 | 0.0000000000076138 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_904 | 3 | 15 | 0.0000761331 |
| Populus trichocarpa | Chr10 | 6 | CH_ptr_241 | 4 | 9 | 0.00000000510682 |
| Populus trichocarpa | Chr08 | 6 | CH_ptr_449 | 3 | 6 | 0.00000561049 |
| Salix brachista | GWHAAZH00000008 | 6 | CH_sbr_656 | 2 | 2 | 0.00063014 |
| Simmondsia chinensis | GWHAASQ00000020 | 6 | CH_sci_195 | 3 | 8 | 0.00000243495 |
| Sapria himalayana | scaffold8_16897533 | 6 | CH_shi_381 | 2 | 3 | 0.000171536 |
| Solanum lycopersicum | SL4.0ch11 | 6 | CH_sly_887 | 2 | 3 | 0.000586941 |
| Solanum tuberosum | ST4.03ch06 | 6 | CH_stu_286 | 4 | 17 | 0.0000000144015 |
| Selenicereus undatus | Scaffold_33673 | 6 | CH_sun_102 | 3 | 4 | 0.00000110869 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_397 | 6 | CH_tpr_757 | 2 | 2 | 0.000756974 |
| Utricularia gibba | unitig_0 | 6 | CH_ugi_20 | 4 | 6 | 0.000000000124272 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |