Functional clusters

Information

  • Type InterPro
  • Description Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr6 5 CH_acertr_746 2 2 0.000211491
Actinidia chinensis Lachesis_group8 5 CH_ach_513 2 2 0.000543213
Brassica carinata ChrB03 5 CH_bca_1432 2 2 0.000128259
Brassica napus C08 5 CH_bna_1142 2 2 0.000185617
Chenopodium quinoa C_Quinoa_Scaffold_2646 5 CH_cqu_994 2 2 0.000710732
Durio zibethinus NW_019168004.1 5 CH_dzi_339 3 22 0.0000198347
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_626 2 2 0.000134617
Fragaria vesca Fvb4 5 CH_fve_141 4 4 0.0000000000214683
Lupinus albus Lalb_Chr23 5 CH_lal_602 2 2 0.000314895
Medicago truncatula chr3 5 CH_mtr_1065 2 2 0.000123259
Physcomitrium patens Chr01 5 CH_ppa_144 2 2 0.0000612726
Quercus lobata 12 5 CH_qlo_624 3 3 0.00000000399842
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_168 5 5 0.00000000000000106091
Trochodendron aralioides group1 5 CH_tar_112 4 4 0.0000000000454472
Trochodendron aralioides group9 5 CH_tar_298 3 3 0.000000302778
Theobroma cacao Chromosome_9 5 CH_tca_612 2 2 0.000219716
Tripterygium wilfordii NC_052253.1 5 CH_twi_43 5 9 0.000000000000191688
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_586 2 2 0.000278772
Acer truncatum chr6 6 CH_acertr_746 2 2 0.000211491
Actinidia chinensis Lachesis_group8 6 CH_ach_513 2 2 0.000543213
Brassica carinata ChrB03 6 CH_bca_1432 2 2 0.000128259
Brassica napus C08 6 CH_bna_1142 2 2 0.000185617
Chenopodium quinoa C_Quinoa_Scaffold_2646 6 CH_cqu_994 2 2 0.000710732
Durio zibethinus NW_019168004.1 6 CH_dzi_339 3 22 0.0000198347
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_626 2 2 0.000134617
Fragaria x ananassa Fvb4-1 6 CH_fan_383 3 3 0.000000349235
Fragaria vesca Fvb4 6 CH_fve_141 4 4 0.0000000000214683
Lupinus albus Lalb_Chr23 6 CH_lal_602 2 2 0.000314895
Medicago truncatula chr3 6 CH_mtr_1065 2 2 0.000123259
Physcomitrium patens Chr01 6 CH_ppa_144 2 2 0.0000612726
Quercus lobata 12 6 CH_qlo_624 3 3 0.00000000399842
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_168 5 5 0.00000000000000106091
Trochodendron aralioides group1 6 CH_tar_112 4 4 0.0000000000454472
Trochodendron aralioides group9 6 CH_tar_298 3 3 0.000000302778
Theobroma cacao Chromosome_9 6 CH_tca_612 2 2 0.000219716
Tripterygium wilfordii NC_052253.1 6 CH_twi_43 5 9 0.000000000000191688
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_586 2 2 0.000278772

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001