Functional clusters
Information
- Type InterPro
- Description Cyclin, C-terminal domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_628 | 3 | 5 | 0.000427016 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_308 | 3 | 3 | 0.00000553416 |
| Brassica rapa | A03 | 5 | CH_bra_596 | 3 | 5 | 0.000807514 |
| Camellia sinensis var. sinensis | Chr4 | 5 | CH_camsi_1510 | 3 | 6 | 0.000955383 |
| Cardamine hirsuta | Chr1 | 5 | CH_chi_670 | 3 | 5 | 0.000290541 |
| Capsella rubella | scaffold_1 | 5 | CH_cru_218 | 4 | 4 | 0.0000000479879 |
| Daucus carota | DCARv2_Chr4 | 5 | CH_dca_391 | 3 | 3 | 0.0000557621 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_701 | 3 | 5 | 0.000275682 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_492 | 3 | 3 | 0.0000152269 |
| Glycine max | Gm03 | 5 | CH_gma_468 | 4 | 7 | 0.00000556157 |
| Magnolia biondii | Chr12 | 5 | CH_mbi_944 | 3 | 6 | 0.000162544 |
| Medicago truncatula | chr3 | 5 | CH_mtr_285 | 5 | 5 | 0.0000000000181829 |
| Medicago truncatula | chr3 | 5 | CH_mtr_807 | 5 | 36 | 0.0000067172 |
| Oryza sativa ssp. japonica | chr02 | 5 | CH_osa_97 | 7 | 20 | 0.000000000000442515 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_511 | 5 | 65 | 0.000142982 |
| Phaseolus vulgaris | Chr09 | 5 | CH_pvu_403 | 5 | 40 | 0.0000387501 |
| Quercus lobata | 9 | 5 | CH_qlo_1312 | 3 | 3 | 0.0000567375 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_1006 | 4 | 21 | 0.0000405854 |
| Sechium edule | LG03 | 5 | CH_sed_234 | 4 | 7 | 0.00000347363 |
| Sechium edule | LG13 | 5 | CH_sed_420 | 4 | 18 | 0.000300162 |
| Solanum lycopersicum | SL4.0ch12 | 5 | CH_sly_286 | 5 | 14 | 0.0000000574627 |
| Solanum pennellii | Spenn-ch12 | 5 | CH_spe_206 | 5 | 11 | 0.00000000589064 |
| Solanum pennellii | Spenn-ch02 | 5 | CH_spe_275 | 4 | 5 | 0.0000000871288 |
| Solanum tuberosum | ST4.03ch12 | 5 | CH_stu_555 | 4 | 15 | 0.0000361188 |
| Vigna mungo | CM024072.1 | 5 | CH_vmu_260 | 5 | 31 | 0.00000818867 |
| Zea mays | 5 | 5 | CH_zma_222 | 4 | 6 | 0.00000150043 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_628 | 3 | 5 | 0.000427016 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_308 | 3 | 3 | 0.00000553416 |
| Brassica rapa | A03 | 6 | CH_bra_596 | 3 | 5 | 0.000807514 |
| Camellia sinensis var. sinensis | Chr4 | 6 | CH_camsi_1510 | 3 | 6 | 0.000955383 |
| Cardamine hirsuta | Chr1 | 6 | CH_chi_670 | 3 | 5 | 0.000290541 |
| Capsella rubella | scaffold_1 | 6 | CH_cru_218 | 4 | 4 | 0.0000000479879 |
| Daucus carota | DCARv2_Chr4 | 6 | CH_dca_391 | 3 | 3 | 0.0000557621 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_701 | 3 | 5 | 0.000275682 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_492 | 3 | 3 | 0.0000152269 |
| Glycine max | Gm03 | 6 | CH_gma_468 | 4 | 7 | 0.00000556157 |
| Magnolia biondii | Chr12 | 6 | CH_mbi_944 | 3 | 6 | 0.000162544 |
| Medicago truncatula | chr3 | 6 | CH_mtr_285 | 5 | 5 | 0.0000000000181829 |
| Medicago truncatula | chr3 | 6 | CH_mtr_807 | 5 | 36 | 0.0000067172 |
| Oryza sativa ssp. japonica | chr02 | 6 | CH_osa_97 | 7 | 20 | 0.000000000000442515 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_511 | 5 | 65 | 0.000142982 |
| Phaseolus vulgaris | Chr09 | 6 | CH_pvu_403 | 5 | 40 | 0.0000387501 |
| Quercus lobata | 9 | 6 | CH_qlo_1312 | 3 | 3 | 0.0000567375 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_1006 | 4 | 21 | 0.0000405854 |
| Sechium edule | LG03 | 6 | CH_sed_234 | 4 | 7 | 0.00000347363 |
| Sechium edule | LG13 | 6 | CH_sed_420 | 4 | 18 | 0.000300162 |
| Solanum lycopersicum | SL4.0ch12 | 6 | CH_sly_286 | 5 | 14 | 0.0000000574627 |
| Solanum pennellii | Spenn-ch12 | 6 | CH_spe_206 | 5 | 11 | 0.00000000589064 |
| Solanum pennellii | Spenn-ch02 | 6 | CH_spe_275 | 4 | 5 | 0.0000000871288 |
| Solanum tuberosum | ST4.03ch12 | 6 | CH_stu_555 | 4 | 15 | 0.0000361188 |
| Vigna mungo | CM024072.1 | 6 | CH_vmu_260 | 5 | 31 | 0.00000818867 |
| Zea mays | 5 | 6 | CH_zma_222 | 4 | 6 | 0.00000150043 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |