Functional clusters

Information

  • Type InterPro
  • Description Acireductone dioxygenase ARD family

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr4 5 CH_acertr_220 4 20 0.0000000254391
Actinidia chinensis Lachesis_group3 5 CH_ach_446 2 2 0.000325928
Avicennia marina ScioBoG_12795_HRSCAF_12848 5 CH_ama_160 2 2 0.000258665
Aquilegia oxysepala CHR02 5 CH_aox_330 2 2 0.0000801989
Amborella trichopoda AmTr_v1.0_scaffold00002 5 CH_atr_379 2 2 0.0000794407
Camellia sinensis var. sinensis Chr9 5 CH_camsi_1206 2 2 0.000275128
Cannabis sativa NC_044376.1 5 CH_cansat_397 2 2 0.0000656642
Capsicum annuum PGAv.1.6.scaffold1437 5 CH_can_680 2 2 0.000247831
Cicer arietinum L. Ca_LG4_v3 5 CH_car_274 2 3 0.000233481
Coffea canephora chr3 5 CH_ccan_397 2 7 0.0000638831
Citrus clementina scaffold_9 5 CH_ccl_523 2 2 0.0000820311
Carya illinoinensis Chr02 5 CH_cil_668 2 2 0.000185948
Carica papaya supercontig_44 5 CH_cpa_304 2 2 0.0000950661
Daucus carota DCARv2_Chr1 5 CH_dca_513 2 2 0.000191333
Durio zibethinus NW_019167904.1 5 CH_dzi_436 2 2 0.000139047
Eucalyptus grandis Chr02 5 CH_egr_817 3 6 0.00000102744
Erythranthe guttata scaffold_7 5 CH_egut_492 2 2 0.0000728147
Fragaria vesca Fvb4 5 CH_fve_544 2 2 0.0000589102
Lonicera japonica GWHAAZE00000006 5 CH_lonja_1046 2 2 0.000359324
Malus domestica Chr16 5 CH_mdo_955 2 2 0.000113763
Medicago truncatula chr1 5 CH_mtr_1036 2 3 0.000123256
Nelumbo nucifera chr1 5 CH_nnu_378 2 3 0.0000481684
Nicotiana tabacum Nitab4.5_0000090 5 CH_nta_75 3 4 0.0000000722405
Olea europaea chr22 5 CH_oeu_435 2 2 0.000160137
Oryza sativa ssp. japonica chr10 5 CH_osa_640 2 2 0.000316874
Petunia axillaris Peaxi162Scf00316 5 CH_pax_69 4 5 0.00000000000522419
Prunus persica Pp01 5 CH_ppe_589 2 2 0.0000745962
Pisum sativum chr6LG2 5 CH_psa_600 2 4 0.000312965
Papaver somniferum NW_020627707.1 5 CH_pso_1085 2 2 0.000337941
Populus trichocarpa Chr08 5 CH_ptr_613 2 2 0.0001734
Quercus lobata 6 5 CH_qlo_1547 2 4 0.000309757
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_423 3 3 0.00000000238391
Rhododendron simsii chr04 5 CH_rsi_667 2 2 0.0000645307
Striga asiatica scaffold191 5 CH_sas_171 2 2 0.000187611
Salvia bowleyana GWHASIU00000007 5 CH_sbo_481 2 2 0.000045498
Solanum lycopersicum SL4.0ch09 5 CH_sly_225 3 3 0.00000000516764
Schrenkiella parvula ch7-4 5 CH_spa_285 2 2 0.000236202
Solanum pennellii Spenn-ch09 5 CH_spe_194 3 3 0.00000000296764
Solanum tuberosum ST4.03ch09 5 CH_stu_318 3 3 0.0000000393922
Trochodendron aralioides group17 5 CH_tar_874 2 2 0.000600366
Theobroma cacao Chromosome_4 5 CH_tca_524 2 2 0.0000732386
Tripterygium wilfordii NC_052232.1 5 CH_twi_397 2 2 0.000167252
Vitis vinifera chr5 5 CH_vvi_498 2 2 0.000076063
Acer truncatum chr4 6 CH_acertr_220 4 20 0.0000000254391
Actinidia chinensis Lachesis_group3 6 CH_ach_446 2 2 0.000325928
Avicennia marina ScioBoG_12795_HRSCAF_12848 6 CH_ama_160 2 2 0.000258665
Aquilegia oxysepala CHR02 6 CH_aox_330 2 2 0.0000801989
Amborella trichopoda AmTr_v1.0_scaffold00002 6 CH_atr_379 2 2 0.0000794407
Camellia sinensis var. sinensis Chr9 6 CH_camsi_1206 2 2 0.000275128
Cannabis sativa NC_044376.1 6 CH_cansat_397 2 2 0.0000656642
Capsicum annuum PGAv.1.6.scaffold1437 6 CH_can_680 2 2 0.000247831
Cicer arietinum L. Ca_LG4_v3 6 CH_car_274 2 3 0.000233481
Coffea canephora chr3 6 CH_ccan_397 2 7 0.0000638831
Citrus clementina scaffold_9 6 CH_ccl_523 2 2 0.0000820311
Carya illinoinensis Chr02 6 CH_cil_668 2 2 0.000185948
Carica papaya supercontig_44 6 CH_cpa_304 2 2 0.0000950661
Daucus carota DCARv2_Chr1 6 CH_dca_513 2 2 0.000191333
Durio zibethinus NW_019167904.1 6 CH_dzi_436 2 2 0.000139047
Eucalyptus grandis Chr02 6 CH_egr_817 3 6 0.00000102744
Erythranthe guttata scaffold_7 6 CH_egut_492 2 2 0.0000728147
Fragaria vesca Fvb4 6 CH_fve_544 2 2 0.0000589102
Lonicera japonica GWHAAZE00000006 6 CH_lonja_1046 2 2 0.000359324
Malus domestica Chr16 6 CH_mdo_955 2 2 0.000113763
Medicago truncatula chr1 6 CH_mtr_1036 2 3 0.000123256
Nelumbo nucifera chr1 6 CH_nnu_378 2 3 0.0000481684
Nicotiana tabacum Nitab4.5_0000090 6 CH_nta_75 3 4 0.0000000722405
Olea europaea chr22 6 CH_oeu_435 2 2 0.000160137
Oryza sativa ssp. japonica chr10 6 CH_osa_640 2 2 0.000316874
Petunia axillaris Peaxi162Scf00316 6 CH_pax_69 4 5 0.00000000000522419
Prunus persica Pp01 6 CH_ppe_589 2 2 0.0000745962
Pisum sativum chr6LG2 6 CH_psa_600 2 4 0.000312965
Papaver somniferum NW_020627707.1 6 CH_pso_1085 2 2 0.000337941
Populus trichocarpa Chr08 6 CH_ptr_613 2 2 0.0001734
Quercus lobata 6 6 CH_qlo_1547 2 4 0.000309757
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_423 3 3 0.00000000238391
Rhododendron simsii chr04 6 CH_rsi_667 2 2 0.0000645307
Striga asiatica scaffold191 6 CH_sas_171 2 2 0.000187611
Salvia bowleyana GWHASIU00000007 6 CH_sbo_481 2 2 0.000045498
Solanum lycopersicum SL4.0ch09 6 CH_sly_225 3 3 0.00000000516764
Schrenkiella parvula ch7-4 6 CH_spa_285 2 2 0.000236202
Solanum pennellii Spenn-ch09 6 CH_spe_194 3 3 0.00000000296764
Solanum tuberosum ST4.03ch09 6 CH_stu_318 3 3 0.0000000393922
Trochodendron aralioides group17 6 CH_tar_874 2 2 0.000600366
Theobroma cacao Chromosome_4 6 CH_tca_524 2 2 0.0000732386
Tripterygium wilfordii NC_052232.1 6 CH_twi_397 2 2 0.000167252
Vitis vinifera chr5 6 CH_vvi_498 2 2 0.000076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001