Functional clusters

Information

  • Type InterPro
  • Description Nicotianamine synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr7 5 CH_acertr_744 2 2 0.000211491
Brassica carinata ChrC06 5 CH_bca_245 4 5 0.000000000199985
Cannabis sativa NC_044375.1 5 CH_cansat_284 3 6 0.00000258633
Capsicum annuum PGAv.1.6.scaffold1076 5 CH_can_559 2 2 0.0000826105
Citrus clementina scaffold_1 5 CH_ccl_188 4 6 0.000000000124196
Cucumis sativus L. chr2 5 CH_csa_452 2 2 0.000500856
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_625 2 2 0.000134617
Lupinus albus Lalb_Chr21 5 CH_lal_87 4 4 0.0000000000303595
Lonicera japonica GWHAAZE00000009 5 CH_lonja_1214 2 2 0.000898311
Lonicera japonica GWHAAZE00000006 5 CH_lonja_432 3 3 0.000000107598
Lactuca sativa Lsat_1_v8_lg_7 5 CH_lsa_763 2 2 0.000308404
Magnolia biondii Chr14 5 CH_mbi_507 3 8 0.000000792362
Malus domestica Chr13 5 CH_mdo_1089 2 2 0.000227527
Manihot esculenta Chromosome14 5 CH_mes_345 3 5 0.00000111842
Manihot esculenta Chromosome08 5 CH_mes_720 2 2 0.000915947
Oryza sativa ssp. japonica chr03 5 CH_osa_580 2 2 0.000158437
Papaver somniferum NC_039359.1 5 CH_pso_1219 3 14 0.000636036
Papaver somniferum NC_039359.1 5 CH_pso_287 5 16 0.000000000447464
Papaver somniferum NC_039363.1 5 CH_pso_698 3 4 0.0000070032
Papaver somniferum NC_039359.1 5 CH_pso_825 3 6 0.0000350022
Populus trichocarpa Chr10 5 CH_ptr_679 2 2 0.000346801
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_1233 2 2 0.000239192
Salix brachista GWHAAZH00000004 5 CH_sbr_200 4 11 0.00000000866421
Zea mays 9 5 CH_zma_75 5 16 0.0000000000281837
Acer truncatum chr7 6 CH_acertr_744 2 2 0.000211491
Brassica carinata ChrC06 6 CH_bca_245 4 5 0.000000000199985
Cannabis sativa NC_044375.1 6 CH_cansat_284 3 6 0.00000258633
Capsicum annuum PGAv.1.6.scaffold1076 6 CH_can_559 2 2 0.0000826105
Citrus clementina scaffold_1 6 CH_ccl_188 4 6 0.000000000124196
Cucumis melo chr05 6 CH_cme_414 2 2 0.000400267
Cucumis sativus L. chr2 6 CH_csa_452 2 2 0.000500856
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_625 2 2 0.000134617
Lupinus albus Lalb_Chr21 6 CH_lal_87 4 4 0.0000000000303595
Lonicera japonica GWHAAZE00000009 6 CH_lonja_1214 2 2 0.000898311
Lonicera japonica GWHAAZE00000006 6 CH_lonja_432 3 3 0.000000107598
Lactuca sativa Lsat_1_v8_lg_7 6 CH_lsa_763 2 2 0.000308404
Magnolia biondii Chr14 6 CH_mbi_507 3 8 0.000000792362
Malus domestica Chr13 6 CH_mdo_1089 2 2 0.000227527
Manihot esculenta Chromosome14 6 CH_mes_345 3 5 0.00000111842
Manihot esculenta Chromosome08 6 CH_mes_720 2 2 0.000915947
Oryza sativa ssp. japonica chr03 6 CH_osa_580 2 2 0.000158437
Papaver somniferum NC_039359.1 6 CH_pso_1219 3 14 0.000636036
Papaver somniferum NC_039359.1 6 CH_pso_287 5 16 0.000000000447464
Papaver somniferum NC_039363.1 6 CH_pso_698 3 4 0.0000070032
Papaver somniferum NC_039359.1 6 CH_pso_825 3 6 0.0000350022
Populus trichocarpa Chr10 6 CH_ptr_679 2 2 0.000346801
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_1233 2 2 0.000239192
Salix brachista GWHAAZH00000004 6 CH_sbr_200 4 11 0.00000000866421
Zea mays 9 6 CH_zma_75 5 16 0.0000000000281837

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001