Functional clusters
Information
- Type InterPro
- Description Nicotianamine synthase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr7 | 5 | CH_acertr_744 | 2 | 2 | 0.000211491 |
| Brassica carinata | ChrC06 | 5 | CH_bca_245 | 4 | 5 | 0.000000000199985 |
| Cannabis sativa | NC_044375.1 | 5 | CH_cansat_284 | 3 | 6 | 0.00000258633 |
| Capsicum annuum | PGAv.1.6.scaffold1076 | 5 | CH_can_559 | 2 | 2 | 0.0000826105 |
| Citrus clementina | scaffold_1 | 5 | CH_ccl_188 | 4 | 6 | 0.000000000124196 |
| Cucumis sativus L. | chr2 | 5 | CH_csa_452 | 2 | 2 | 0.000500856 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 5 | CH_eca_625 | 2 | 2 | 0.000134617 |
| Lupinus albus | Lalb_Chr21 | 5 | CH_lal_87 | 4 | 4 | 0.0000000000303595 |
| Lonicera japonica | GWHAAZE00000009 | 5 | CH_lonja_1214 | 2 | 2 | 0.000898311 |
| Lonicera japonica | GWHAAZE00000006 | 5 | CH_lonja_432 | 3 | 3 | 0.000000107598 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 5 | CH_lsa_763 | 2 | 2 | 0.000308404 |
| Magnolia biondii | Chr14 | 5 | CH_mbi_507 | 3 | 8 | 0.000000792362 |
| Malus domestica | Chr13 | 5 | CH_mdo_1089 | 2 | 2 | 0.000227527 |
| Manihot esculenta | Chromosome14 | 5 | CH_mes_345 | 3 | 5 | 0.00000111842 |
| Manihot esculenta | Chromosome08 | 5 | CH_mes_720 | 2 | 2 | 0.000915947 |
| Oryza sativa ssp. japonica | chr03 | 5 | CH_osa_580 | 2 | 2 | 0.000158437 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_1219 | 3 | 14 | 0.000636036 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_287 | 5 | 16 | 0.000000000447464 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_698 | 3 | 4 | 0.0000070032 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_825 | 3 | 6 | 0.0000350022 |
| Populus trichocarpa | Chr10 | 5 | CH_ptr_679 | 2 | 2 | 0.000346801 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_1233 | 2 | 2 | 0.000239192 |
| Salix brachista | GWHAAZH00000004 | 5 | CH_sbr_200 | 4 | 11 | 0.00000000866421 |
| Zea mays | 9 | 5 | CH_zma_75 | 5 | 16 | 0.0000000000281837 |
| Acer truncatum | chr7 | 6 | CH_acertr_744 | 2 | 2 | 0.000211491 |
| Brassica carinata | ChrC06 | 6 | CH_bca_245 | 4 | 5 | 0.000000000199985 |
| Cannabis sativa | NC_044375.1 | 6 | CH_cansat_284 | 3 | 6 | 0.00000258633 |
| Capsicum annuum | PGAv.1.6.scaffold1076 | 6 | CH_can_559 | 2 | 2 | 0.0000826105 |
| Citrus clementina | scaffold_1 | 6 | CH_ccl_188 | 4 | 6 | 0.000000000124196 |
| Cucumis melo | chr05 | 6 | CH_cme_414 | 2 | 2 | 0.000400267 |
| Cucumis sativus L. | chr2 | 6 | CH_csa_452 | 2 | 2 | 0.000500856 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 6 | CH_eca_625 | 2 | 2 | 0.000134617 |
| Lupinus albus | Lalb_Chr21 | 6 | CH_lal_87 | 4 | 4 | 0.0000000000303595 |
| Lonicera japonica | GWHAAZE00000009 | 6 | CH_lonja_1214 | 2 | 2 | 0.000898311 |
| Lonicera japonica | GWHAAZE00000006 | 6 | CH_lonja_432 | 3 | 3 | 0.000000107598 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 6 | CH_lsa_763 | 2 | 2 | 0.000308404 |
| Magnolia biondii | Chr14 | 6 | CH_mbi_507 | 3 | 8 | 0.000000792362 |
| Malus domestica | Chr13 | 6 | CH_mdo_1089 | 2 | 2 | 0.000227527 |
| Manihot esculenta | Chromosome14 | 6 | CH_mes_345 | 3 | 5 | 0.00000111842 |
| Manihot esculenta | Chromosome08 | 6 | CH_mes_720 | 2 | 2 | 0.000915947 |
| Oryza sativa ssp. japonica | chr03 | 6 | CH_osa_580 | 2 | 2 | 0.000158437 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_1219 | 3 | 14 | 0.000636036 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_287 | 5 | 16 | 0.000000000447464 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_698 | 3 | 4 | 0.0000070032 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_825 | 3 | 6 | 0.0000350022 |
| Populus trichocarpa | Chr10 | 6 | CH_ptr_679 | 2 | 2 | 0.000346801 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_1233 | 2 | 2 | 0.000239192 |
| Salix brachista | GWHAAZH00000004 | 6 | CH_sbr_200 | 4 | 11 | 0.00000000866421 |
| Zea mays | 9 | 6 | CH_zma_75 | 5 | 16 | 0.0000000000281837 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |