Functional clusters

Information

  • Type InterPro
  • Description Carotenoid oxygenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 5 CH_aag_125 3 3 0.00000115945
Acer truncatum chr7 5 CH_acertr_218 5 20 0.0000000244591
Acer truncatum chr3 5 CH_acertr_424 3 3 0.00000608328
Acer truncatum chr11 5 CH_acertr_84 5 5 0.00000000000158751
Actinidia chinensis Lachesis_group14 5 CH_ach_241 3 6 0.0000321993
Aquilegia oxysepala CHR07 5 CH_aox_234 3 3 0.00000438992
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 5 CH_arhy_1277 3 13 0.000776319
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 5 CH_arhy_241 5 6 0.00000000000153632
Amborella trichopoda AmTr_v1.0_scaffold00056 5 CH_atr_71 5 5 0.000000000000897208
Brassica carinata ChrC05 5 CH_bca_1072 3 4 0.0000123212
Brassica napus A09 5 CH_bna_1200 3 9 0.000259426
Camellia sinensis var. sinensis Chr6 5 CH_camsi_425 4 7 0.0000000240773
Camellia sinensis var. sinensis Chr15 5 CH_camsi_829 4 28 0.0000140081
Cannabis sativa NC_044372.1 5 CH_cansat_67 5 5 0.00000000000017949
Capsicum annuum PGAv.1.6.scaffold219 5 CH_can_433 3 3 0.00000696127
Corylus avellana 1 5 CH_cav_85 5 5 0.000000000000333603
Citrus clementina scaffold_1 5 CH_ccl_582 3 7 0.000128403
Daucus carota DCARv2_Chr6 5 CH_dca_454 3 6 0.0000828899
Davidia involucrata GWHABJS00000017 5 CH_din_363 4 18 0.00000443116
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_490 3 5 0.0000292501
Erigeron canadensis Conyza_canadensis_scaffold:8 5 CH_eca_652 3 8 0.000163657
Eucalyptus grandis Chr03 5 CH_egr_354 6 11 0.000000000000386706
Eucalyptus grandis Chr03 5 CH_egr_989 5 70 0.0000210942
Erythranthe guttata scaffold_5 5 CH_egut_141 6 10 0.0000000000106782
Erythranthe guttata scaffold_1 5 CH_egut_465 3 3 0.0000433929
Erythranthe guttata scaffold_5 5 CH_egut_738 3 6 0.000865633
Erythranthe guttata scaffold_3 5 CH_egut_739 3 6 0.000865633
Fragaria vesca Fvb2 5 CH_fve_154 5 12 0.0000000000565897
Glycine max Gm04 5 CH_gma_292 4 8 0.0000000273071
Glycine max Gm06 5 CH_gma_668 3 9 0.000123274
Helianthus annuus HanXRQChr16 5 CH_han_605 3 3 0.00000297913
Helianthus annuus HanXRQChr13 5 CH_han_776 3 5 0.0000297746
Hydrangea macrophylla Hma1.2p1_0184F.1 5 CH_hma_172 3 3 0.000000647896
Lupinus albus Lalb_Chr03 5 CH_lal_261 3 3 0.00000118167
Lotus japonicus chr1 5 CH_lja_25 7 12 1.43008e-17
Malus domestica Chr15 5 CH_mdo_1275 3 9 0.000415915
Malus domestica Chr08 5 CH_mdo_291 5 14 0.00000000164487
Malus domestica Chr02 5 CH_mdo_678 3 3 0.00000496124
Malus domestica Chr13 5 CH_mdo_679 3 3 0.00000496124
Manihot esculenta Chromosome03 5 CH_mes_395 3 3 0.00000313221
Medicago truncatula chr8 5 CH_mtr_416 4 7 0.00000000360342
Medicago truncatula chr5 5 CH_mtr_642 3 3 0.00000055708
Nelumbo nucifera chr1 5 CH_nnu_326 3 5 0.0000126629
Oryza sativa ssp. japonica chr08 5 CH_osa_336 3 3 0.00000190363
Petunia axillaris Peaxi162Scf00227 5 CH_pax_274 4 12 0.00000157724
Petunia axillaris Peaxi162Scf00323 5 CH_pax_306 3 3 0.00000605891
Petunia axillaris Peaxi162Scf00953 5 CH_pax_34 6 6 7.20281e-16
Punica granatum NC_045131.1 5 CH_pgr_323 3 3 0.00000472967
Punica granatum NC_045134.1 5 CH_pgr_324 3 3 0.00000472967
Physcomitrium patens Chr06 5 CH_ppa_64 3 3 0.000000675801
Prunus persica Pp01 5 CH_ppe_319 4 10 0.0000000548524
Populus trichocarpa Chr09 5 CH_ptr_286 4 5 0.000000025639
Populus trichocarpa Chr18 5 CH_ptr_366 4 9 0.000000644893
Populus trichocarpa Chr06 5 CH_ptr_385 4 10 0.00000107432
Populus trichocarpa Chr01 5 CH_ptr_464 3 3 0.00000887524
Phaseolus vulgaris Chr09 5 CH_pvu_375 3 7 0.0000158603
Quercus lobata 4 5 CH_qlo_397 6 23 0.00000000000142572
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_1065 3 9 0.0000910039
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_948 3 7 0.0000379334
Rhododendron simsii chr07 5 CH_rsi_326 4 5 0.00000000733424
Rhododendron simsii chr04 5 CH_rsi_576 3 4 0.0000139873
Salvia bowleyana GWHASIU00000004 5 CH_sbo_133 8 45 0.00000000000020235
Salvia bowleyana GWHASIU00000008 5 CH_sbo_303 4 6 0.000000133229
Salvia bowleyana GWHASIU00000003 5 CH_sbo_433 4 16 0.0000160822
Salix brachista GWHAAZH00000018 5 CH_sbr_73 6 7 0.00000000000000290481
Sequoiadendron giganteum chr10 5 CH_sgi_1339 3 3 0.00000199351
Sequoiadendron giganteum chr11 5 CH_sgi_408 5 5 0.000000000000184528
Sequoiadendron giganteum chr11 5 CH_sgi_482 5 6 0.0000000000011069
Solanum lycopersicum SL4.0ch01 5 CH_sly_398 3 3 0.00000147795
Selaginella moellendorffii scaffold_12 5 CH_smo_21 7 17 0.000000000000117357
Selaginella moellendorffii scaffold_15 5 CH_smo_47 5 7 0.000000000243336
Solanum tuberosum ST4.03ch08 5 CH_stu_401 3 3 0.000000866628
Solanum tuberosum ST4.03ch08 5 CH_stu_655 3 10 0.000103851
Trochodendron aralioides group9 5 CH_tar_367 3 3 0.00000196806
Theobroma cacao Chromosome_9 5 CH_tca_239 4 4 0.00000000571062
Theobroma cacao Chromosome_9 5 CH_tca_299 4 6 0.0000000855727
Tripterygium wilfordii NC_052235.1 5 CH_twi_69 5 8 0.000000000012177
Utricularia gibba unitig_748 5 CH_ugi_85 3 3 0.00000459468
Vigna mungo CM024072.1 5 CH_vmu_127 4 7 0.0000000140122
Vitis vinifera chr4 5 CH_vvi_289 4 9 0.000000166246
Anthoceros agrestis Sc2ySwM_344 6 CH_aag_125 3 3 0.00000115945
Acer truncatum chr7 6 CH_acertr_218 5 20 0.0000000244591
Acer truncatum chr3 6 CH_acertr_424 3 3 0.00000608328
Acer truncatum chr11 6 CH_acertr_84 5 5 0.00000000000158751
Actinidia chinensis Lachesis_group14 6 CH_ach_241 3 6 0.0000321993
Aquilegia oxysepala CHR07 6 CH_aox_234 3 3 0.00000438992
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 6 CH_arhy_1277 3 13 0.000776319
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 6 CH_arhy_241 5 6 0.00000000000153632
Amborella trichopoda AmTr_v1.0_scaffold00056 6 CH_atr_71 5 5 0.000000000000897208
Brassica carinata ChrC05 6 CH_bca_1072 3 4 0.0000123212
Brassica napus A09 6 CH_bna_1200 3 9 0.000259426
Camellia sinensis var. sinensis Chr6 6 CH_camsi_425 4 7 0.0000000240773
Camellia sinensis var. sinensis Chr15 6 CH_camsi_829 4 28 0.0000140081
Cannabis sativa NC_044372.1 6 CH_cansat_67 5 5 0.00000000000017949
Capsicum annuum PGAv.1.6.scaffold219 6 CH_can_433 3 3 0.00000696127
Corylus avellana 1 6 CH_cav_85 5 5 0.000000000000333603
Citrus clementina scaffold_1 6 CH_ccl_582 3 7 0.000128403
Daucus carota DCARv2_Chr6 6 CH_dca_454 3 6 0.0000828899
Davidia involucrata GWHABJS00000017 6 CH_din_363 4 18 0.00000443116
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_490 3 5 0.0000292501
Erigeron canadensis Conyza_canadensis_scaffold:8 6 CH_eca_652 3 8 0.000163657
Eucalyptus grandis Chr03 6 CH_egr_354 6 11 0.000000000000386706
Eucalyptus grandis Chr03 6 CH_egr_989 5 70 0.0000210942
Erythranthe guttata scaffold_5 6 CH_egut_141 6 10 0.0000000000106782
Erythranthe guttata scaffold_1 6 CH_egut_465 3 3 0.0000433929
Erythranthe guttata scaffold_5 6 CH_egut_738 3 6 0.000865633
Erythranthe guttata scaffold_3 6 CH_egut_739 3 6 0.000865633
Fragaria x ananassa Fvb2-3 6 CH_fan_1001 3 9 0.000363385
Fragaria vesca Fvb2 6 CH_fve_154 5 12 0.0000000000565897
Glycine max Gm04 6 CH_gma_292 4 8 0.0000000273071
Glycine max Gm06 6 CH_gma_668 3 9 0.000123274
Helianthus annuus HanXRQChr16 6 CH_han_605 3 3 0.00000297913
Helianthus annuus HanXRQChr13 6 CH_han_776 3 5 0.0000297746
Hydrangea macrophylla Hma1.2p1_0184F.1 6 CH_hma_172 3 3 0.000000647896
Lupinus albus Lalb_Chr03 6 CH_lal_261 3 3 0.00000118167
Lotus japonicus chr1 6 CH_lja_25 7 12 1.43008e-17
Malus domestica Chr15 6 CH_mdo_1275 3 9 0.000415915
Malus domestica Chr08 6 CH_mdo_291 5 14 0.00000000164487
Malus domestica Chr02 6 CH_mdo_678 3 3 0.00000496124
Malus domestica Chr13 6 CH_mdo_679 3 3 0.00000496124
Manihot esculenta Chromosome03 6 CH_mes_395 3 3 0.00000313221
Medicago truncatula chr8 6 CH_mtr_416 4 7 0.00000000360342
Medicago truncatula chr5 6 CH_mtr_642 3 3 0.00000055708
Nelumbo nucifera chr1 6 CH_nnu_326 3 5 0.0000126629
Oryza sativa ssp. japonica chr08 6 CH_osa_336 3 3 0.00000190363
Petunia axillaris Peaxi162Scf00227 6 CH_pax_274 4 12 0.00000157724
Petunia axillaris Peaxi162Scf00323 6 CH_pax_306 3 3 0.00000605891
Petunia axillaris Peaxi162Scf00953 6 CH_pax_34 6 6 7.20281e-16
Punica granatum NC_045131.1 6 CH_pgr_323 3 3 0.00000472967
Punica granatum NC_045134.1 6 CH_pgr_324 3 3 0.00000472967
Physcomitrium patens Chr06 6 CH_ppa_64 3 3 0.000000675801
Prunus persica Pp01 6 CH_ppe_319 4 10 0.0000000548524
Populus trichocarpa Chr09 6 CH_ptr_286 4 5 0.000000025639
Populus trichocarpa Chr18 6 CH_ptr_366 4 9 0.000000644893
Populus trichocarpa Chr06 6 CH_ptr_385 4 10 0.00000107432
Populus trichocarpa Chr01 6 CH_ptr_464 3 3 0.00000887524
Phaseolus vulgaris Chr09 6 CH_pvu_375 3 7 0.0000158603
Quercus lobata 4 6 CH_qlo_397 6 23 0.00000000000142572
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_1065 3 9 0.0000910039
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_948 3 7 0.0000379334
Rhododendron simsii chr07 6 CH_rsi_326 4 5 0.00000000733424
Rhododendron simsii chr04 6 CH_rsi_576 3 4 0.0000139873
Salvia bowleyana GWHASIU00000004 6 CH_sbo_133 8 45 0.00000000000020235
Salvia bowleyana GWHASIU00000008 6 CH_sbo_303 4 6 0.000000133229
Salvia bowleyana GWHASIU00000003 6 CH_sbo_433 4 16 0.0000160822
Salix brachista GWHAAZH00000018 6 CH_sbr_73 6 7 0.00000000000000290481
Sequoiadendron giganteum chr10 6 CH_sgi_1339 3 3 0.00000199351
Sequoiadendron giganteum chr11 6 CH_sgi_408 5 5 0.000000000000184528
Sequoiadendron giganteum chr11 6 CH_sgi_482 5 6 0.0000000000011069
Solanum lycopersicum SL4.0ch01 6 CH_sly_398 3 3 0.00000147795
Selaginella moellendorffii scaffold_12 6 CH_smo_21 7 17 0.000000000000117357
Selaginella moellendorffii scaffold_15 6 CH_smo_47 5 7 0.000000000243336
Solanum tuberosum ST4.03ch08 6 CH_stu_401 3 3 0.000000866628
Solanum tuberosum ST4.03ch08 6 CH_stu_655 3 10 0.000103851
Trochodendron aralioides group9 6 CH_tar_367 3 3 0.00000196806
Theobroma cacao Chromosome_9 6 CH_tca_239 4 4 0.00000000571062
Theobroma cacao Chromosome_9 6 CH_tca_299 4 6 0.0000000855727
Tripterygium wilfordii NC_052235.1 6 CH_twi_69 5 8 0.000000000012177
Utricularia gibba unitig_748 6 CH_ugi_85 3 3 0.00000459468
Vigna mungo CM024072.1 6 CH_vmu_127 4 7 0.0000000140122
Vitis vinifera chr4 6 CH_vvi_289 4 9 0.000000166246

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001