Functional clusters
Information
- Type InterPro
- Description Nonaspanin (TM9SF)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr12 | 5 | CH_camsi_1135 | 3 | 5 | 0.000188529 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_54 | 11 | 45 | 4.57793e-21 |
| Cannabis sativa | NC_044376.1 | 5 | CH_cansat_346 | 3 | 6 | 0.000028437 |
| Coffea canephora | chr11 | 5 | CH_ccan_188 | 4 | 51 | 0.000000190083 |
| Carya illinoinensis | Chr15 | 5 | CH_cil_722 | 3 | 10 | 0.000313977 |
| Citrullus lanatus | CG_Chr05 | 5 | CH_cla_164 | 3 | 4 | 0.0000135 |
| Davidia involucrata | GWHABJS00000008 | 5 | CH_din_401 | 3 | 3 | 0.0000137097 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_367 | 3 | 3 | 0.00000205383 |
| Eucalyptus grandis | Chr01 | 5 | CH_egr_1032 | 3 | 5 | 0.0000497527 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_986 | 3 | 4 | 0.0000199086 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_443 | 3 | 4 | 0.00000458003 |
| Helianthus annuus | HanXRQChr03 | 5 | CH_han_315 | 5 | 11 | 0.00000000214392 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_607 | 3 | 3 | 0.0000061331 |
| Malus domestica | Chr08 | 5 | CH_mdo_1043 | 3 | 7 | 0.000152612 |
| Malus domestica | Chr06 | 5 | CH_mdo_848 | 3 | 5 | 0.0000436312 |
| Manihot esculenta | Chromosome17 | 5 | CH_mes_423 | 3 | 3 | 0.00000743899 |
| Manihot esculenta | Chromosome15 | 5 | CH_mes_424 | 3 | 3 | 0.00000743899 |
| Oryza sativa ssp. japonica | chr08 | 5 | CH_osa_186 | 4 | 4 | 0.00000000171295 |
| Physcomitrium patens | Chr08 | 5 | CH_ppa_82 | 3 | 3 | 0.00000256241 |
| Quercus lobata | 3 | 5 | CH_qlo_1199 | 3 | 4 | 0.0000467585 |
| Quercus lobata | 7 | 5 | CH_qlo_130 | 11 | 42 | 2.89433e-22 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_742 | 3 | 3 | 0.00000162106 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_1302 | 3 | 3 | 0.00000129578 |
| Trochodendron aralioides | group1 | 5 | CH_tar_420 | 3 | 3 | 0.0000109433 |
| Tarenaya hassleriana | NW_010970030.1 | 5 | CH_tha_75 | 4 | 4 | 0.00000000495341 |
| Vanilla planifolia | CM028160.1 | 5 | CH_vpl_279 | 3 | 3 | 0.00000933598 |
| Camellia sinensis var. sinensis | Chr12 | 6 | CH_camsi_1135 | 3 | 5 | 0.000188529 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_54 | 11 | 45 | 4.57793e-21 |
| Cannabis sativa | NC_044376.1 | 6 | CH_cansat_346 | 3 | 6 | 0.000028437 |
| Coffea canephora | chr11 | 6 | CH_ccan_188 | 4 | 51 | 0.000000190083 |
| Carya illinoinensis | Chr15 | 6 | CH_cil_722 | 3 | 10 | 0.000313977 |
| Citrullus lanatus | CG_Chr05 | 6 | CH_cla_164 | 3 | 4 | 0.0000135 |
| Davidia involucrata | GWHABJS00000008 | 6 | CH_din_401 | 3 | 3 | 0.0000137097 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_367 | 3 | 3 | 0.00000205383 |
| Eucalyptus grandis | Chr01 | 6 | CH_egr_1032 | 3 | 5 | 0.0000497527 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_986 | 3 | 4 | 0.0000199086 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_443 | 3 | 4 | 0.00000458003 |
| Helianthus annuus | HanXRQChr03 | 6 | CH_han_315 | 5 | 11 | 0.00000000214392 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_607 | 3 | 3 | 0.0000061331 |
| Malus domestica | Chr08 | 6 | CH_mdo_1043 | 3 | 7 | 0.000152612 |
| Malus domestica | Chr06 | 6 | CH_mdo_848 | 3 | 5 | 0.0000436312 |
| Manihot esculenta | Chromosome17 | 6 | CH_mes_423 | 3 | 3 | 0.00000743899 |
| Manihot esculenta | Chromosome15 | 6 | CH_mes_424 | 3 | 3 | 0.00000743899 |
| Oryza sativa ssp. japonica | chr08 | 6 | CH_osa_186 | 4 | 4 | 0.00000000171295 |
| Physcomitrium patens | Chr08 | 6 | CH_ppa_82 | 3 | 3 | 0.00000256241 |
| Quercus lobata | 3 | 6 | CH_qlo_1199 | 3 | 4 | 0.0000467585 |
| Quercus lobata | 7 | 6 | CH_qlo_130 | 11 | 42 | 2.89433e-22 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_742 | 3 | 3 | 0.00000162106 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_1302 | 3 | 3 | 0.00000129578 |
| Trochodendron aralioides | group1 | 6 | CH_tar_420 | 3 | 3 | 0.0000109433 |
| Tarenaya hassleriana | NW_010970030.1 | 6 | CH_tha_75 | 4 | 4 | 0.00000000495341 |
| Vanilla planifolia | CM028160.1 | 6 | CH_vpl_279 | 3 | 3 | 0.00000933598 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |